Hb_140572_010

Information

Type -
Description -
Location Contig140572: 35-698
Sequence    

Annotation

kegg
ID rcu:RCOM_1594120
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012071831.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
swissprot
ID Q9M069
description Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2
trembl
ID A0A067L1X9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04420 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140572_010 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
2 Hb_007753_020 0.1770803051 - - -
3 Hb_006344_010 0.1989134524 - - -
4 Hb_001021_060 0.2300372188 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001195_390 0.2487041385 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
6 Hb_000445_080 0.2571399917 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
7 Hb_123521_010 0.2749303068 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001277_310 0.2979515954 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
9 Hb_004079_020 0.3035969637 - - hypothetical protein glysoja_031528 [Glycine soja]
10 Hb_003446_040 0.3057932491 - - -
11 Hb_000951_040 0.3091678263 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
12 Hb_002890_230 0.3131238605 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
13 Hb_011640_020 0.3236146251 - - hypothetical protein VITISV_036432 [Vitis vinifera]
14 Hb_005914_240 0.3236627007 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
15 Hb_000544_140 0.3246822165 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
16 Hb_004413_030 0.329985276 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_007753_010 0.3327495456 - - -
18 Hb_002243_040 0.333270453 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
19 Hb_000457_160 0.3390400702 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
20 Hb_005656_060 0.3391521171 - - -

Gene co-expression network

sample Hb_140572_010 Hb_140572_010 Hb_007753_020 Hb_007753_020 Hb_140572_010--Hb_007753_020 Hb_006344_010 Hb_006344_010 Hb_140572_010--Hb_006344_010 Hb_001021_060 Hb_001021_060 Hb_140572_010--Hb_001021_060 Hb_001195_390 Hb_001195_390 Hb_140572_010--Hb_001195_390 Hb_000445_080 Hb_000445_080 Hb_140572_010--Hb_000445_080 Hb_123521_010 Hb_123521_010 Hb_140572_010--Hb_123521_010 Hb_000951_040 Hb_000951_040 Hb_007753_020--Hb_000951_040 Hb_011640_020 Hb_011640_020 Hb_007753_020--Hb_011640_020 Hb_007753_020--Hb_006344_010 Hb_007753_020--Hb_001195_390 Hb_013925_010 Hb_013925_010 Hb_007753_020--Hb_013925_010 Hb_006344_010--Hb_001021_060 Hb_006344_010--Hb_001195_390 Hb_004413_030 Hb_004413_030 Hb_006344_010--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_006344_010--Hb_001277_310 Hb_135624_010 Hb_135624_010 Hb_006344_010--Hb_135624_010 Hb_000252_030 Hb_000252_030 Hb_001021_060--Hb_000252_030 Hb_003952_140 Hb_003952_140 Hb_001021_060--Hb_003952_140 Hb_005914_240 Hb_005914_240 Hb_001021_060--Hb_005914_240 Hb_001021_060--Hb_007753_020 Hb_002243_040 Hb_002243_040 Hb_001195_390--Hb_002243_040 Hb_001195_390--Hb_013925_010 Hb_046440_010 Hb_046440_010 Hb_001195_390--Hb_046440_010 Hb_000160_200 Hb_000160_200 Hb_001195_390--Hb_000160_200 Hb_168343_010 Hb_168343_010 Hb_000445_080--Hb_168343_010 Hb_001846_050 Hb_001846_050 Hb_000445_080--Hb_001846_050 Hb_006455_080 Hb_006455_080 Hb_000445_080--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_010626_020 Hb_010626_020 Hb_123521_010--Hb_010626_020 Hb_000544_140 Hb_000544_140 Hb_123521_010--Hb_000544_140 Hb_000370_010 Hb_000370_010 Hb_123521_010--Hb_000370_010 Hb_003446_040 Hb_003446_040 Hb_123521_010--Hb_003446_040 Hb_123521_010--Hb_006344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93358 0.41691 0 0.30981 0.170863 52.5684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24336 2.60442 32.0977 7.00322 0.852306

CAGE analysis