Hb_000951_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig951: 113537-114640
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G200400g
description hypothetical protein
nr
ID KDP35959.1
description hypothetical protein JCGZ_09931 [Jatropha curcas]
swissprot
ID Q9SI38
description MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1
trembl
ID A0A067KVR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09931 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mads-box transcription factor 23-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000951_040 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
2 Hb_007753_010 0.165493782 - - -
3 Hb_000421_190 0.2186694577 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004871_050 0.2290435723 - - hypothetical protein F383_22684 [Gossypium arboreum]
5 Hb_001396_230 0.2384263199 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
6 Hb_008516_020 0.2409832444 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
7 Hb_001153_220 0.2428014633 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
8 Hb_002739_110 0.2434305998 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_007753_020 0.2482184677 - - -
10 Hb_000690_070 0.2560669108 - - -
11 Hb_012725_090 0.2567695323 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
12 Hb_000567_250 0.2568575937 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
13 Hb_011640_020 0.2571450451 - - hypothetical protein VITISV_036432 [Vitis vinifera]
14 Hb_000387_100 0.2590102269 - - -
15 Hb_001534_170 0.2651635158 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
16 Hb_002400_090 0.2655078065 - - -
17 Hb_004048_060 0.266996378 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
18 Hb_002248_050 0.2671160333 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
19 Hb_001268_400 0.2679624179 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
20 Hb_001616_120 0.2703898015 - - -

Gene co-expression network

sample Hb_000951_040 Hb_000951_040 Hb_007753_010 Hb_007753_010 Hb_000951_040--Hb_007753_010 Hb_000421_190 Hb_000421_190 Hb_000951_040--Hb_000421_190 Hb_004871_050 Hb_004871_050 Hb_000951_040--Hb_004871_050 Hb_001396_230 Hb_001396_230 Hb_000951_040--Hb_001396_230 Hb_008516_020 Hb_008516_020 Hb_000951_040--Hb_008516_020 Hb_001153_220 Hb_001153_220 Hb_000951_040--Hb_001153_220 Hb_001005_070 Hb_001005_070 Hb_007753_010--Hb_001005_070 Hb_007753_010--Hb_004871_050 Hb_186982_010 Hb_186982_010 Hb_007753_010--Hb_186982_010 Hb_002739_110 Hb_002739_110 Hb_007753_010--Hb_002739_110 Hb_011640_020 Hb_011640_020 Hb_007753_010--Hb_011640_020 Hb_002248_050 Hb_002248_050 Hb_000421_190--Hb_002248_050 Hb_000567_250 Hb_000567_250 Hb_000421_190--Hb_000567_250 Hb_002301_320 Hb_002301_320 Hb_000421_190--Hb_002301_320 Hb_103873_010 Hb_103873_010 Hb_000421_190--Hb_103873_010 Hb_000329_600 Hb_000329_600 Hb_000421_190--Hb_000329_600 Hb_009680_050 Hb_009680_050 Hb_000421_190--Hb_009680_050 Hb_000972_010 Hb_000972_010 Hb_004871_050--Hb_000972_010 Hb_000120_650 Hb_000120_650 Hb_004871_050--Hb_000120_650 Hb_000249_130 Hb_000249_130 Hb_004871_050--Hb_000249_130 Hb_017124_020 Hb_017124_020 Hb_004871_050--Hb_017124_020 Hb_000120_120 Hb_000120_120 Hb_004871_050--Hb_000120_120 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400 Hb_005779_100 Hb_005779_100 Hb_001396_230--Hb_005779_100 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_008085_040 Hb_008085_040 Hb_001396_230--Hb_008085_040 Hb_001396_230--Hb_002739_110 Hb_001606_070 Hb_001606_070 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_000392_330 Hb_000392_330 Hb_008516_020--Hb_000392_330 Hb_003086_130 Hb_003086_130 Hb_008516_020--Hb_003086_130 Hb_004048_060 Hb_004048_060 Hb_008516_020--Hb_004048_060 Hb_091433_040 Hb_091433_040 Hb_008516_020--Hb_091433_040 Hb_001534_170 Hb_001534_170 Hb_008516_020--Hb_001534_170 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_001959_160 Hb_001959_160 Hb_001153_220--Hb_001959_160 Hb_001153_220--Hb_024952_010 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.946436 0.281602 0 0 0.520076 5.31332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22128 2.42141 8.67344 0.68153 0

CAGE analysis