Hb_001005_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig1005: 50470-68902
Sequence    

Annotation

kegg
ID rcu:RCOM_1445050
description DNA binding protein, putative
nr
ID XP_012067570.1
description PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
swissprot
ID Q9LYU3
description Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1
trembl
ID A0A067L086
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26879 PE=4 SV=1
Gene Ontology
ID GO:0044237
description ethylene-responsive transcription factor erf113-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00318: 62838-63289 , PASA_asmbl_00320: 60995-61734 , PASA_asmbl_00322: 63479-63705 , PASA_asmbl_00323: 68079-68615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001005_070 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
2 Hb_006816_450 0.1819882087 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003096_030 0.1952618424 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
4 Hb_000723_160 0.1966689119 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
5 Hb_001538_140 0.2000682671 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
6 Hb_014549_020 0.2006361748 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
7 Hb_007753_010 0.2039633187 - - -
8 Hb_001014_120 0.2116443822 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
9 Hb_004225_150 0.2138592117 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
10 Hb_088202_010 0.2142202796 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
11 Hb_007161_010 0.2167425457 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
12 Hb_001100_010 0.2168957793 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
13 Hb_002609_060 0.218030011 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
14 Hb_000436_010 0.2203549419 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
15 Hb_001959_160 0.2256149567 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
16 Hb_004048_060 0.2279174455 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
17 Hb_003147_050 0.2282004355 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002290_040 0.2286045379 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001396_230 0.2291251856 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
20 Hb_001766_100 0.2297905752 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001005_070 Hb_001005_070 Hb_006816_450 Hb_006816_450 Hb_001005_070--Hb_006816_450 Hb_003096_030 Hb_003096_030 Hb_001005_070--Hb_003096_030 Hb_000723_160 Hb_000723_160 Hb_001005_070--Hb_000723_160 Hb_001538_140 Hb_001538_140 Hb_001005_070--Hb_001538_140 Hb_014549_020 Hb_014549_020 Hb_001005_070--Hb_014549_020 Hb_007753_010 Hb_007753_010 Hb_001005_070--Hb_007753_010 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_003147_050 Hb_003147_050 Hb_003096_030--Hb_003147_050 Hb_012423_050 Hb_012423_050 Hb_003096_030--Hb_012423_050 Hb_005701_010 Hb_005701_010 Hb_003096_030--Hb_005701_010 Hb_003096_030--Hb_001538_140 Hb_003096_030--Hb_002290_040 Hb_001427_230 Hb_001427_230 Hb_003096_030--Hb_001427_230 Hb_000003_050 Hb_000003_050 Hb_000723_160--Hb_000003_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_001619_080 Hb_001619_080 Hb_000723_160--Hb_001619_080 Hb_000723_160--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_001538_140--Hb_003147_050 Hb_000432_050 Hb_000432_050 Hb_001538_140--Hb_000432_050 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460 Hb_001100_010 Hb_001100_010 Hb_014549_020--Hb_001100_010 Hb_001766_100 Hb_001766_100 Hb_014549_020--Hb_001766_100 Hb_014549_020--Hb_000436_010 Hb_014549_020--Hb_006816_450 Hb_014549_020--Hb_007161_010 Hb_000951_040 Hb_000951_040 Hb_007753_010--Hb_000951_040 Hb_004871_050 Hb_004871_050 Hb_007753_010--Hb_004871_050 Hb_186982_010 Hb_186982_010 Hb_007753_010--Hb_186982_010 Hb_002739_110 Hb_002739_110 Hb_007753_010--Hb_002739_110 Hb_011640_020 Hb_011640_020 Hb_007753_010--Hb_011640_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9739 1.08474 0.281867 0.777188 1.97686 15.9244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2623 16.3607 41.7398 20.9699 0.135032

CAGE analysis