Hb_014549_020

Information

Type -
Description -
Location Contig14549: 8238-9468
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12350g
description hypothetical protein
nr
ID XP_006376358.1
description hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MW23
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s12350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014549_020 0.0 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
2 Hb_001100_010 0.1326642845 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
3 Hb_001766_100 0.1630127786 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000436_010 0.1776850249 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
5 Hb_006816_450 0.180101266 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007161_010 0.1959677061 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
7 Hb_001005_070 0.2006361748 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
8 Hb_005614_050 0.2089467068 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
9 Hb_088202_010 0.2095584987 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
10 Hb_149539_010 0.2114322219 - - -
11 Hb_003878_030 0.2193161064 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
12 Hb_000157_010 0.2197338876 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
13 Hb_001538_140 0.219990074 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
14 Hb_002756_020 0.2200436076 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
15 Hb_002391_230 0.2226059377 - - hypothetical protein RCOM_0745080 [Ricinus communis]
16 Hb_152439_020 0.2238179597 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
17 Hb_007304_040 0.224254235 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
18 Hb_001143_090 0.2245114977 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
19 Hb_000363_010 0.2278683573 - - -
20 Hb_004225_150 0.2309857584 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_014549_020 Hb_014549_020 Hb_001100_010 Hb_001100_010 Hb_014549_020--Hb_001100_010 Hb_001766_100 Hb_001766_100 Hb_014549_020--Hb_001766_100 Hb_000436_010 Hb_000436_010 Hb_014549_020--Hb_000436_010 Hb_006816_450 Hb_006816_450 Hb_014549_020--Hb_006816_450 Hb_007161_010 Hb_007161_010 Hb_014549_020--Hb_007161_010 Hb_001005_070 Hb_001005_070 Hb_014549_020--Hb_001005_070 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_001100_010--Hb_000436_010 Hb_000157_010 Hb_000157_010 Hb_001100_010--Hb_000157_010 Hb_001100_010--Hb_001766_100 Hb_002983_030 Hb_002983_030 Hb_001766_100--Hb_002983_030 Hb_000193_240 Hb_000193_240 Hb_001766_100--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_001766_100--Hb_004453_140 Hb_152439_020 Hb_152439_020 Hb_001766_100--Hb_152439_020 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000723_160 Hb_000723_160 Hb_000436_010--Hb_000723_160 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_005614_050 Hb_005614_050 Hb_007161_010--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_007161_010--Hb_000363_200 Hb_007161_010--Hb_000179_050 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_003551_050 Hb_003551_050 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_001005_070--Hb_006816_450 Hb_003096_030 Hb_003096_030 Hb_001005_070--Hb_003096_030 Hb_001005_070--Hb_000723_160 Hb_001538_140 Hb_001538_140 Hb_001005_070--Hb_001538_140 Hb_007753_010 Hb_007753_010 Hb_001005_070--Hb_007753_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.288349 0.0195704 0 0.0328655 0.366187 0.194508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.357736 0.457248 1.10748 0.606829 0

CAGE analysis