Hb_003878_030

Information

Type -
Description -
Location Contig3878: 39513-41806
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11120g
description POPTRDRAFT_660852; hypothetical protein
nr
ID XP_002317458.1
description hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID B9I1T5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11120g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38891: 40038-41477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_030 0.0 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
2 Hb_000363_010 0.1337881012 - - -
3 Hb_012660_020 0.1435364248 - - -
4 Hb_000436_010 0.1498976464 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
5 Hb_000723_160 0.1650183315 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
6 Hb_001150_030 0.1721510239 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
7 Hb_002138_010 0.1807038055 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
8 Hb_001143_090 0.1820414397 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
9 Hb_005214_130 0.1863813764 - - -
10 Hb_012239_100 0.1867011266 - - hypothetical protein VITISV_043897 [Vitis vinifera]
11 Hb_001619_080 0.1898801593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_042729_010 0.190126418 - - -
13 Hb_000907_170 0.1909398342 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_001538_140 0.1952045335 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
15 Hb_000836_080 0.1956918023 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
16 Hb_001278_050 0.1974509741 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_007161_010 0.197737112 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
18 Hb_088202_010 0.1980634291 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
19 Hb_005618_040 0.1993441191 - - -
20 Hb_006816_450 0.2006983678 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003878_030 Hb_003878_030 Hb_000363_010 Hb_000363_010 Hb_003878_030--Hb_000363_010 Hb_012660_020 Hb_012660_020 Hb_003878_030--Hb_012660_020 Hb_000436_010 Hb_000436_010 Hb_003878_030--Hb_000436_010 Hb_000723_160 Hb_000723_160 Hb_003878_030--Hb_000723_160 Hb_001150_030 Hb_001150_030 Hb_003878_030--Hb_001150_030 Hb_002138_010 Hb_002138_010 Hb_003878_030--Hb_002138_010 Hb_000934_030 Hb_000934_030 Hb_000363_010--Hb_000934_030 Hb_001143_090 Hb_001143_090 Hb_000363_010--Hb_001143_090 Hb_042729_010 Hb_042729_010 Hb_000363_010--Hb_042729_010 Hb_002392_040 Hb_002392_040 Hb_000363_010--Hb_002392_040 Hb_001153_200 Hb_001153_200 Hb_000363_010--Hb_001153_200 Hb_012660_020--Hb_001150_030 Hb_075653_020 Hb_075653_020 Hb_012660_020--Hb_075653_020 Hb_012660_020--Hb_000363_010 Hb_005618_040 Hb_005618_040 Hb_012660_020--Hb_005618_040 Hb_000107_370 Hb_000107_370 Hb_012660_020--Hb_000107_370 Hb_006816_450 Hb_006816_450 Hb_000436_010--Hb_006816_450 Hb_000436_010--Hb_000723_160 Hb_007161_010 Hb_007161_010 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_001100_010 Hb_001100_010 Hb_000436_010--Hb_001100_010 Hb_000003_050 Hb_000003_050 Hb_000723_160--Hb_000003_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_001619_080 Hb_001619_080 Hb_000723_160--Hb_001619_080 Hb_000723_160--Hb_006816_450 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_002943_030 Hb_002943_030 Hb_001150_030--Hb_002943_030 Hb_003647_030 Hb_003647_030 Hb_001150_030--Hb_003647_030 Hb_002609_060 Hb_002609_060 Hb_001150_030--Hb_002609_060 Hb_000098_220 Hb_000098_220 Hb_001150_030--Hb_000098_220 Hb_002374_400 Hb_002374_400 Hb_002138_010--Hb_002374_400 Hb_000003_270 Hb_000003_270 Hb_002138_010--Hb_000003_270 Hb_001832_120 Hb_001832_120 Hb_002138_010--Hb_001832_120 Hb_000742_110 Hb_000742_110 Hb_002138_010--Hb_000742_110 Hb_007181_070 Hb_007181_070 Hb_002138_010--Hb_007181_070 Hb_003209_200 Hb_003209_200 Hb_002138_010--Hb_003209_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8251 26.8152 0 0.666127 31.5034 34.303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.4897 90.0623 109.766 70.7851 0.0734412

CAGE analysis