Hb_002943_030

Information

Type -
Description -
Location Contig2943: 77724-81381
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002943_030 0.0 - - -
2 Hb_000098_220 0.1814105302 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
3 Hb_001150_030 0.1920013299 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
4 Hb_105712_010 0.224292771 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_012660_020 0.2622270373 - - -
6 Hb_150751_010 0.2679334986 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
7 Hb_081504_010 0.2700270509 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_029920_040 0.2712328385 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
9 Hb_005128_040 0.2775766637 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000912_020 0.2793069821 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
11 Hb_005214_130 0.2801666302 - - -
12 Hb_002805_290 0.2922868918 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
13 Hb_002609_060 0.3039982388 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
14 Hb_004650_100 0.3056615727 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
15 Hb_002151_050 0.3065035405 - - cytochrome P450, putative [Ricinus communis]
16 Hb_002233_120 0.3083980272 - - -
17 Hb_003106_140 0.3097391686 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001005_070 0.3099544113 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
19 Hb_065378_010 0.3122547856 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_003096_030 0.3123191346 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002943_030 Hb_002943_030 Hb_000098_220 Hb_000098_220 Hb_002943_030--Hb_000098_220 Hb_001150_030 Hb_001150_030 Hb_002943_030--Hb_001150_030 Hb_105712_010 Hb_105712_010 Hb_002943_030--Hb_105712_010 Hb_012660_020 Hb_012660_020 Hb_002943_030--Hb_012660_020 Hb_150751_010 Hb_150751_010 Hb_002943_030--Hb_150751_010 Hb_081504_010 Hb_081504_010 Hb_002943_030--Hb_081504_010 Hb_001623_430 Hb_001623_430 Hb_000098_220--Hb_001623_430 Hb_004650_100 Hb_004650_100 Hb_000098_220--Hb_004650_100 Hb_075653_020 Hb_075653_020 Hb_000098_220--Hb_075653_020 Hb_000106_100 Hb_000106_100 Hb_000098_220--Hb_000106_100 Hb_002609_060 Hb_002609_060 Hb_000098_220--Hb_002609_060 Hb_001150_030--Hb_012660_020 Hb_003878_030 Hb_003878_030 Hb_001150_030--Hb_003878_030 Hb_003647_030 Hb_003647_030 Hb_001150_030--Hb_003647_030 Hb_001150_030--Hb_002609_060 Hb_001150_030--Hb_000098_220 Hb_105712_010--Hb_150751_010 Hb_003335_070 Hb_003335_070 Hb_105712_010--Hb_003335_070 Hb_005128_040 Hb_005128_040 Hb_105712_010--Hb_005128_040 Hb_004705_030 Hb_004705_030 Hb_105712_010--Hb_004705_030 Hb_005214_130 Hb_005214_130 Hb_105712_010--Hb_005214_130 Hb_012660_020--Hb_003878_030 Hb_012660_020--Hb_075653_020 Hb_000363_010 Hb_000363_010 Hb_012660_020--Hb_000363_010 Hb_005618_040 Hb_005618_040 Hb_012660_020--Hb_005618_040 Hb_000107_370 Hb_000107_370 Hb_012660_020--Hb_000107_370 Hb_012253_010 Hb_012253_010 Hb_150751_010--Hb_012253_010 Hb_159679_010 Hb_159679_010 Hb_150751_010--Hb_159679_010 Hb_008768_030 Hb_008768_030 Hb_150751_010--Hb_008768_030 Hb_150751_010--Hb_001150_030 Hb_000997_330 Hb_000997_330 Hb_081504_010--Hb_000997_330 Hb_004157_120 Hb_004157_120 Hb_081504_010--Hb_004157_120 Hb_161072_020 Hb_161072_020 Hb_081504_010--Hb_161072_020 Hb_143766_100 Hb_143766_100 Hb_081504_010--Hb_143766_100 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0165399 0 0 0 0 0.0290517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113243 0.0296941 0.0554042 0.0712938 0

CAGE analysis