Hb_105712_010

Information

Type -
Description -
Location Contig105712: 36-729
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q8LMG6
description Putative retroelement OS=Oryza sativa subsp. japonica GN=OJ1325D05.3 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105712_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_002943_030 0.224292771 - - -
3 Hb_150751_010 0.2354830819 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
4 Hb_003335_070 0.2460860379 - - -
5 Hb_005128_040 0.2487424142 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004705_030 0.2492294139 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005214_130 0.2542736684 - - -
8 Hb_002000_110 0.263305047 - - ASR-like protein 2 [Hevea brasiliensis]
9 Hb_001005_070 0.2691213382 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
10 Hb_001150_030 0.2691326676 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
11 Hb_075449_050 0.2742623923 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
12 Hb_006018_030 0.2842174706 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
13 Hb_012725_110 0.285955035 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
14 Hb_003106_140 0.2868128383 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000699_120 0.289814163 - - DNA-binding family protein [Populus trichocarpa]
16 Hb_042729_010 0.2899798885 - - -
17 Hb_055259_010 0.2900379147 - - -
18 Hb_004206_030 0.2901763954 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_002243_080 0.2903593716 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
20 Hb_020096_020 0.2916970739 - - -

Gene co-expression network

sample Hb_105712_010 Hb_105712_010 Hb_002943_030 Hb_002943_030 Hb_105712_010--Hb_002943_030 Hb_150751_010 Hb_150751_010 Hb_105712_010--Hb_150751_010 Hb_003335_070 Hb_003335_070 Hb_105712_010--Hb_003335_070 Hb_005128_040 Hb_005128_040 Hb_105712_010--Hb_005128_040 Hb_004705_030 Hb_004705_030 Hb_105712_010--Hb_004705_030 Hb_005214_130 Hb_005214_130 Hb_105712_010--Hb_005214_130 Hb_000098_220 Hb_000098_220 Hb_002943_030--Hb_000098_220 Hb_001150_030 Hb_001150_030 Hb_002943_030--Hb_001150_030 Hb_012660_020 Hb_012660_020 Hb_002943_030--Hb_012660_020 Hb_002943_030--Hb_150751_010 Hb_081504_010 Hb_081504_010 Hb_002943_030--Hb_081504_010 Hb_012253_010 Hb_012253_010 Hb_150751_010--Hb_012253_010 Hb_159679_010 Hb_159679_010 Hb_150751_010--Hb_159679_010 Hb_008768_030 Hb_008768_030 Hb_150751_010--Hb_008768_030 Hb_150751_010--Hb_001150_030 Hb_000699_120 Hb_000699_120 Hb_003335_070--Hb_000699_120 Hb_000603_240 Hb_000603_240 Hb_003335_070--Hb_000603_240 Hb_000002_390 Hb_000002_390 Hb_003335_070--Hb_000002_390 Hb_010589_110 Hb_010589_110 Hb_003335_070--Hb_010589_110 Hb_005321_030 Hb_005321_030 Hb_003335_070--Hb_005321_030 Hb_003106_140 Hb_003106_140 Hb_005128_040--Hb_003106_140 Hb_000012_230 Hb_000012_230 Hb_005128_040--Hb_000012_230 Hb_002233_120 Hb_002233_120 Hb_005128_040--Hb_002233_120 Hb_002805_290 Hb_002805_290 Hb_005128_040--Hb_002805_290 Hb_002000_110 Hb_002000_110 Hb_005128_040--Hb_002000_110 Hb_012423_050 Hb_012423_050 Hb_005128_040--Hb_012423_050 Hb_027892_010 Hb_027892_010 Hb_004705_030--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_004705_030--Hb_000249_090 Hb_000548_040 Hb_000548_040 Hb_004705_030--Hb_000548_040 Hb_012725_110 Hb_012725_110 Hb_004705_030--Hb_012725_110 Hb_004705_030--Hb_000699_120 Hb_075449_050 Hb_075449_050 Hb_004705_030--Hb_075449_050 Hb_042729_010 Hb_042729_010 Hb_005214_130--Hb_042729_010 Hb_005539_210 Hb_005539_210 Hb_005214_130--Hb_005539_210 Hb_004206_030 Hb_004206_030 Hb_005214_130--Hb_004206_030 Hb_001012_040 Hb_001012_040 Hb_005214_130--Hb_001012_040 Hb_001279_130 Hb_001279_130 Hb_005214_130--Hb_001279_130 Hb_005214_130--Hb_003106_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178581 0 0 0 0 0.0504787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.258656 0.0677747 0.240576 0.138165 0

CAGE analysis