Hb_000098_220

Information

Type -
Description -
Location Contig98: 219094-219357
Sequence    

Annotation

kegg
ID rcu:RCOM_1674160
description hypothetical protein
nr
ID XP_012091616.1
description PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
swissprot
ID Q5M750
description VQ motif-containing protein 4 OS=Arabidopsis thaliana GN=VQ4 PE=1 SV=1
trembl
ID A0A067JB38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21453 PE=4 SV=1
Gene Ontology
ID GO:0003700
description vq motif-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_220 0.0 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
2 Hb_002943_030 0.1814105302 - - -
3 Hb_001623_430 0.2050845194 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
4 Hb_004650_100 0.2072775079 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
5 Hb_075653_020 0.209139892 - - -
6 Hb_000106_100 0.2104879563 - - -
7 Hb_002609_060 0.2114085734 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
8 Hb_001150_030 0.2117941478 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
9 Hb_008699_040 0.2127737711 - - -
10 Hb_003349_070 0.2159455538 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
11 Hb_003680_070 0.2191401543 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
12 Hb_017895_030 0.2194174179 transcription factor TF Family: C2H2 -
13 Hb_012239_100 0.2230472967 - - hypothetical protein VITISV_043897 [Vitis vinifera]
14 Hb_001700_020 0.2241774296 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
15 Hb_000616_040 0.2249324646 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_005539_210 0.2255240332 - - -
17 Hb_012660_020 0.2263375144 - - -
18 Hb_004223_260 0.2286305091 - - hypothetical protein F383_09277 [Gossypium arboreum]
19 Hb_000215_180 0.2312663905 - - hypothetical protein 17 [Hevea brasiliensis]
20 Hb_000922_100 0.2342893918 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]

Gene co-expression network

sample Hb_000098_220 Hb_000098_220 Hb_002943_030 Hb_002943_030 Hb_000098_220--Hb_002943_030 Hb_001623_430 Hb_001623_430 Hb_000098_220--Hb_001623_430 Hb_004650_100 Hb_004650_100 Hb_000098_220--Hb_004650_100 Hb_075653_020 Hb_075653_020 Hb_000098_220--Hb_075653_020 Hb_000106_100 Hb_000106_100 Hb_000098_220--Hb_000106_100 Hb_002609_060 Hb_002609_060 Hb_000098_220--Hb_002609_060 Hb_001150_030 Hb_001150_030 Hb_002943_030--Hb_001150_030 Hb_105712_010 Hb_105712_010 Hb_002943_030--Hb_105712_010 Hb_012660_020 Hb_012660_020 Hb_002943_030--Hb_012660_020 Hb_150751_010 Hb_150751_010 Hb_002943_030--Hb_150751_010 Hb_081504_010 Hb_081504_010 Hb_002943_030--Hb_081504_010 Hb_003349_070 Hb_003349_070 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_004650_100--Hb_000922_100 Hb_002659_040 Hb_002659_040 Hb_004650_100--Hb_002659_040 Hb_001700_020 Hb_001700_020 Hb_004650_100--Hb_001700_020 Hb_001427_230 Hb_001427_230 Hb_004650_100--Hb_001427_230 Hb_004650_100--Hb_183086_040 Hb_000007_040 Hb_000007_040 Hb_004650_100--Hb_000007_040 Hb_075653_020--Hb_001623_430 Hb_005539_210 Hb_005539_210 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_008699_040 Hb_008699_040 Hb_075653_020--Hb_008699_040 Hb_001723_080 Hb_001723_080 Hb_075653_020--Hb_001723_080 Hb_000215_180 Hb_000215_180 Hb_000106_100--Hb_000215_180 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040 Hb_000907_170 Hb_000907_170 Hb_002609_060--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_002609_060--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.61016 0.569633 0.231179 1.09551 1.15253 22.7678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.5191 46.5552 35.4204 36.886 2.97807

CAGE analysis