Hb_012660_020

Information

Type -
Description -
Location Contig12660: 71909-74271
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012660_020 0.0 - - -
2 Hb_003878_030 0.1435364248 - - hypothetical protein POPTR_0011s11120g [Populus trichocarpa]
3 Hb_001150_030 0.1601469008 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
4 Hb_075653_020 0.1602814949 - - -
5 Hb_000363_010 0.1696547497 - - -
6 Hb_005618_040 0.1714314649 - - -
7 Hb_000107_370 0.1768124953 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
8 Hb_000261_460 0.1771937451 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
9 Hb_005214_130 0.179083197 - - -
10 Hb_007409_020 0.1831759296 - - -
11 Hb_003106_140 0.1839361934 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000608_420 0.1861691383 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
13 Hb_003861_120 0.186737111 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
14 Hb_003751_120 0.1891140165 - - -
15 Hb_055259_010 0.1919709161 - - -
16 Hb_003680_070 0.1934529171 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
17 Hb_002805_290 0.1943469704 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
18 Hb_042729_010 0.1958287621 - - -
19 Hb_010710_020 0.196785176 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
20 Hb_001150_040 0.1975353971 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]

Gene co-expression network

sample Hb_012660_020 Hb_012660_020 Hb_003878_030 Hb_003878_030 Hb_012660_020--Hb_003878_030 Hb_001150_030 Hb_001150_030 Hb_012660_020--Hb_001150_030 Hb_075653_020 Hb_075653_020 Hb_012660_020--Hb_075653_020 Hb_000363_010 Hb_000363_010 Hb_012660_020--Hb_000363_010 Hb_005618_040 Hb_005618_040 Hb_012660_020--Hb_005618_040 Hb_000107_370 Hb_000107_370 Hb_012660_020--Hb_000107_370 Hb_003878_030--Hb_000363_010 Hb_000436_010 Hb_000436_010 Hb_003878_030--Hb_000436_010 Hb_000723_160 Hb_000723_160 Hb_003878_030--Hb_000723_160 Hb_003878_030--Hb_001150_030 Hb_002138_010 Hb_002138_010 Hb_003878_030--Hb_002138_010 Hb_002943_030 Hb_002943_030 Hb_001150_030--Hb_002943_030 Hb_003647_030 Hb_003647_030 Hb_001150_030--Hb_003647_030 Hb_002609_060 Hb_002609_060 Hb_001150_030--Hb_002609_060 Hb_000098_220 Hb_000098_220 Hb_001150_030--Hb_000098_220 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_005539_210 Hb_005539_210 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_008699_040 Hb_008699_040 Hb_075653_020--Hb_008699_040 Hb_001723_080 Hb_001723_080 Hb_075653_020--Hb_001723_080 Hb_000934_030 Hb_000934_030 Hb_000363_010--Hb_000934_030 Hb_001143_090 Hb_001143_090 Hb_000363_010--Hb_001143_090 Hb_042729_010 Hb_042729_010 Hb_000363_010--Hb_042729_010 Hb_002392_040 Hb_002392_040 Hb_000363_010--Hb_002392_040 Hb_001153_200 Hb_001153_200 Hb_000363_010--Hb_001153_200 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_005618_040--Hb_025087_010 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270 Hb_000163_200 Hb_000163_200 Hb_000107_370--Hb_000163_200 Hb_030565_070 Hb_030565_070 Hb_000107_370--Hb_030565_070 Hb_003751_120 Hb_003751_120 Hb_000107_370--Hb_003751_120 Hb_054301_010 Hb_054301_010 Hb_000107_370--Hb_054301_010 Hb_031403_010 Hb_031403_010 Hb_000107_370--Hb_031403_010 Hb_007409_020 Hb_007409_020 Hb_000107_370--Hb_007409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89082 1.12274 0 0.0496823 2.83977 5.06443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5947 6.37677 5.8192 6.42258 0

CAGE analysis