Hb_000107_370

Information

Type -
Description -
Location Contig107: 255766-263187
Sequence    

Annotation

kegg
ID rcu:RCOM_1566320
description pantothenate kinase, putative
nr
ID XP_012074163.1
description PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
swissprot
ID Q949P3
description Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1
trembl
ID A0A067LQ17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10747 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_370 0.0 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
2 Hb_000163_200 0.1238847322 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
3 Hb_030565_070 0.1239419587 - - -
4 Hb_003751_120 0.1347277337 - - -
5 Hb_054301_010 0.1490193757 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
6 Hb_031403_010 0.151281255 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
7 Hb_007409_020 0.1518449288 - - -
8 Hb_001035_030 0.1534283558 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
9 Hb_036369_010 0.1545670496 - - -
10 Hb_001454_330 0.1602258046 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
11 Hb_005618_040 0.1623280786 - - -
12 Hb_010362_020 0.165670712 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
13 Hb_000318_380 0.1661588878 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
14 Hb_000261_460 0.1669381672 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
15 Hb_004607_140 0.1672261347 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
16 Hb_000563_590 0.1678071074 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
17 Hb_098315_120 0.1691065868 - - -
18 Hb_009026_050 0.1698330959 - - vacuolar ATPase F subunit [Hevea brasiliensis]
19 Hb_004242_080 0.1700287083 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
20 Hb_010710_020 0.1702598419 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]

Gene co-expression network

sample Hb_000107_370 Hb_000107_370 Hb_000163_200 Hb_000163_200 Hb_000107_370--Hb_000163_200 Hb_030565_070 Hb_030565_070 Hb_000107_370--Hb_030565_070 Hb_003751_120 Hb_003751_120 Hb_000107_370--Hb_003751_120 Hb_054301_010 Hb_054301_010 Hb_000107_370--Hb_054301_010 Hb_031403_010 Hb_031403_010 Hb_000107_370--Hb_031403_010 Hb_007409_020 Hb_007409_020 Hb_000107_370--Hb_007409_020 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_004607_140 Hb_004607_140 Hb_000163_200--Hb_004607_140 Hb_001951_110 Hb_001951_110 Hb_000163_200--Hb_001951_110 Hb_157854_010 Hb_157854_010 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_030565_070--Hb_000163_200 Hb_010710_020 Hb_010710_020 Hb_030565_070--Hb_010710_020 Hb_001153_080 Hb_001153_080 Hb_030565_070--Hb_001153_080 Hb_001722_040 Hb_001722_040 Hb_030565_070--Hb_001722_040 Hb_005618_040 Hb_005618_040 Hb_030565_070--Hb_005618_040 Hb_003751_120--Hb_031403_010 Hb_000304_020 Hb_000304_020 Hb_003751_120--Hb_000304_020 Hb_030765_020 Hb_030765_020 Hb_003751_120--Hb_030765_020 Hb_003751_120--Hb_005618_040 Hb_025087_010 Hb_025087_010 Hb_003751_120--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_003751_120--Hb_000085_300 Hb_001035_030 Hb_001035_030 Hb_054301_010--Hb_001035_030 Hb_004204_030 Hb_004204_030 Hb_054301_010--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_054301_010--Hb_000866_300 Hb_001804_040 Hb_001804_040 Hb_054301_010--Hb_001804_040 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_031403_010--Hb_000304_020 Hb_001514_190 Hb_001514_190 Hb_031403_010--Hb_001514_190 Hb_005867_040 Hb_005867_040 Hb_031403_010--Hb_005867_040 Hb_009026_050 Hb_009026_050 Hb_031403_010--Hb_009026_050 Hb_000809_040 Hb_000809_040 Hb_031403_010--Hb_000809_040 Hb_012660_020 Hb_012660_020 Hb_007409_020--Hb_012660_020 Hb_007409_020--Hb_003751_120 Hb_007409_020--Hb_030565_070 Hb_005539_210 Hb_005539_210 Hb_007409_020--Hb_005539_210 Hb_075653_020 Hb_075653_020 Hb_007409_020--Hb_075653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.399711 0.0671218 0.0120658 0.0242728 0.517251 0.401459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.81236 0.697146 0.271227 0.36022 0

CAGE analysis