Hb_002609_060

Information

Type -
Description -
Location Contig2609: 45129-50548
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25600g
description POPTRDRAFT_172400; hypothetical protein
nr
ID XP_012068718.1
description PREDICTED: sugar transport protein 8-like [Jatropha curcas]
swissprot
ID Q9SBA7
description Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2
trembl
ID A0A067LDG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08503 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transport protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27180: 49525-49926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_060 0.0 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
2 Hb_000907_170 0.0780402576 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_145084_010 0.1242157285 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
4 Hb_000742_110 0.1601616423 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
5 Hb_010560_040 0.1653657989 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
6 Hb_000363_200 0.1710755372 - - 40S ribosomal protein S8, putative [Ricinus communis]
7 Hb_002719_080 0.173071482 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
8 Hb_002138_010 0.1754333696 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
9 Hb_001700_020 0.1779358478 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
10 Hb_088202_010 0.179814337 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
11 Hb_003097_210 0.1801357817 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
12 Hb_000648_020 0.1813580121 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
13 Hb_001538_140 0.1826411322 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
14 Hb_004208_130 0.1848111166 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
15 Hb_003147_050 0.186778966 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000364_210 0.1873741518 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
17 Hb_007181_070 0.1885324518 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
18 Hb_002272_090 0.1894456681 - - RING/U-box superfamily protein [Theobroma cacao]
19 Hb_000616_040 0.1915685962 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_000599_350 0.1934332114 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002609_060 Hb_002609_060 Hb_000907_170 Hb_000907_170 Hb_002609_060--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_002609_060--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080 Hb_000907_170--Hb_145084_010 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210 Hb_145084_010--Hb_000363_200 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_000742_110--Hb_010560_040 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_155764_010 Hb_155764_010 Hb_000742_110--Hb_155764_010 Hb_000865_070 Hb_000865_070 Hb_000742_110--Hb_000865_070 Hb_048476_050 Hb_048476_050 Hb_000742_110--Hb_048476_050 Hb_010560_040--Hb_003097_210 Hb_010560_040--Hb_000865_070 Hb_010560_040--Hb_155764_010 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000363_200--Hb_000865_070 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_005914_200 Hb_005914_200 Hb_002719_080--Hb_005914_200 Hb_026048_070 Hb_026048_070 Hb_002719_080--Hb_026048_070 Hb_002518_290 Hb_002518_290 Hb_002719_080--Hb_002518_290 Hb_000648_020 Hb_000648_020 Hb_002719_080--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_002719_080--Hb_000364_210 Hb_000236_150 Hb_000236_150 Hb_002719_080--Hb_000236_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118817 0.0708985 0.00906325 0.0870066 0.085079 0.421401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.593533 0.851115 0.775457 0.744762 0.0443605

CAGE analysis