Hb_145084_010

Information

Type -
Description -
Location Contig145084: 881-3069
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24350g
description hypothetical protein
nr
ID XP_012087483.1
description PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23978 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145084_010 0.0 - - PREDICTED: uncharacterized protein LOC105646270 [Jatropha curcas]
2 Hb_002609_060 0.1242157285 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
3 Hb_000363_200 0.1288365962 - - 40S ribosomal protein S8, putative [Ricinus communis]
4 Hb_000907_170 0.1314352808 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_001863_090 0.1388786813 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
6 Hb_003097_210 0.140319549 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
7 Hb_001016_090 0.1415162498 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
8 Hb_001832_120 0.1425541156 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
9 Hb_001700_020 0.1455738446 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
10 Hb_002272_090 0.1517721996 - - RING/U-box superfamily protein [Theobroma cacao]
11 Hb_002138_010 0.1534691155 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
12 Hb_032260_030 0.1547799926 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
13 Hb_002719_080 0.1549821577 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
14 Hb_148930_010 0.1550045572 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
15 Hb_011795_020 0.1576624217 - - -
16 Hb_002925_030 0.1593207639 - - 40S ribosomal protein S16B [Hevea brasiliensis]
17 Hb_003398_120 0.1602598988 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
18 Hb_007181_070 0.1611430058 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
19 Hb_000742_110 0.1622719209 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
20 Hb_088202_010 0.1628914409 - - hypothetical protein JCGZ_13241 [Jatropha curcas]

Gene co-expression network

sample Hb_145084_010 Hb_145084_010 Hb_002609_060 Hb_002609_060 Hb_145084_010--Hb_002609_060 Hb_000363_200 Hb_000363_200 Hb_145084_010--Hb_000363_200 Hb_000907_170 Hb_000907_170 Hb_145084_010--Hb_000907_170 Hb_001863_090 Hb_001863_090 Hb_145084_010--Hb_001863_090 Hb_003097_210 Hb_003097_210 Hb_145084_010--Hb_003097_210 Hb_001016_090 Hb_001016_090 Hb_145084_010--Hb_001016_090 Hb_002609_060--Hb_000907_170 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_002609_060--Hb_000363_200 Hb_002719_080 Hb_002719_080 Hb_002609_060--Hb_002719_080 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_000363_200--Hb_003097_210 Hb_001545_060 Hb_001545_060 Hb_000363_200--Hb_001545_060 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_000907_170--Hb_010560_040 Hb_000907_170--Hb_003097_210 Hb_002925_030 Hb_002925_030 Hb_001863_090--Hb_002925_030 Hb_011311_010 Hb_011311_010 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001863_090--Hb_001016_090 Hb_003398_120 Hb_003398_120 Hb_001863_090--Hb_003398_120 Hb_032260_030 Hb_032260_030 Hb_001863_090--Hb_032260_030 Hb_155764_010 Hb_155764_010 Hb_003097_210--Hb_155764_010 Hb_003097_210--Hb_010560_040 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003097_210--Hb_003226_280 Hb_003097_210--Hb_000865_070 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6907 5.6236 8.67259 8.10303 9.33435 26.5832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.954 81.3924 50.3155 52.5161 2.28558

CAGE analysis