Hb_003647_030

Information

Type -
Description -
Location Contig3647: 26272-27200
Sequence    

Annotation

kegg
ID vvi:100264838
description probable glutathione S-transferase
nr
ID XP_011000057.1
description PREDICTED: probable glutathione S-transferase [Populus euphratica]
swissprot
ID Q03662
description Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID D2WL57
description Tau class glutathione transferase GSTU45 OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016740
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_030 0.0 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
2 Hb_004242_190 0.1771808798 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
3 Hb_001258_060 0.1947572809 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
4 Hb_001150_030 0.2000211203 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
5 Hb_028872_060 0.2088355409 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
6 Hb_004668_100 0.2123812186 - - -
7 Hb_003120_030 0.2193302938 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
8 Hb_004871_070 0.2211860937 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
9 Hb_000742_110 0.2215834926 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
10 Hb_000189_640 0.2260843838 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
11 Hb_012660_020 0.2293397358 - - -
12 Hb_001150_040 0.2294845936 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
13 Hb_002045_130 0.2346304982 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
14 Hb_007763_030 0.238307258 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
15 Hb_143629_040 0.2392201178 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010560_040 0.2412637559 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
17 Hb_148209_110 0.2427226817 - - putative polyol transported protein 2 [Hevea brasiliensis]
18 Hb_004116_200 0.2460339681 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
19 Hb_002407_080 0.2496547693 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
20 Hb_048476_050 0.2497192668 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003647_030 Hb_003647_030 Hb_004242_190 Hb_004242_190 Hb_003647_030--Hb_004242_190 Hb_001258_060 Hb_001258_060 Hb_003647_030--Hb_001258_060 Hb_001150_030 Hb_001150_030 Hb_003647_030--Hb_001150_030 Hb_028872_060 Hb_028872_060 Hb_003647_030--Hb_028872_060 Hb_004668_100 Hb_004668_100 Hb_003647_030--Hb_004668_100 Hb_003120_030 Hb_003120_030 Hb_003647_030--Hb_003120_030 Hb_004242_190--Hb_001258_060 Hb_004242_190--Hb_028872_060 Hb_000805_320 Hb_000805_320 Hb_004242_190--Hb_000805_320 Hb_006816_200 Hb_006816_200 Hb_004242_190--Hb_006816_200 Hb_002407_080 Hb_002407_080 Hb_004242_190--Hb_002407_080 Hb_004242_190--Hb_003120_030 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_012660_020 Hb_012660_020 Hb_001150_030--Hb_012660_020 Hb_003878_030 Hb_003878_030 Hb_001150_030--Hb_003878_030 Hb_002943_030 Hb_002943_030 Hb_001150_030--Hb_002943_030 Hb_002609_060 Hb_002609_060 Hb_001150_030--Hb_002609_060 Hb_000098_220 Hb_000098_220 Hb_001150_030--Hb_000098_220 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_000009_620 Hb_000009_620 Hb_028872_060--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_028872_060--Hb_155123_010 Hb_149539_010 Hb_149539_010 Hb_004668_100--Hb_149539_010 Hb_123051_020 Hb_123051_020 Hb_004668_100--Hb_123051_020 Hb_004668_100--Hb_002407_080 Hb_004871_070 Hb_004871_070 Hb_004668_100--Hb_004871_070 Hb_004668_100--Hb_001258_060 Hb_001329_220 Hb_001329_220 Hb_003120_030--Hb_001329_220 Hb_000500_090 Hb_000500_090 Hb_003120_030--Hb_000500_090 Hb_002333_080 Hb_002333_080 Hb_003120_030--Hb_002333_080 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_004048_070 Hb_004048_070 Hb_003120_030--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.96475 1.65773 0.372453 2.01466 13.0552 8.88794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3381 6.89909 16.196 32.2163 0.691604

CAGE analysis