Hb_004668_100

Information

Type -
Description -
Location Contig4668: 84676-89441
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44107: 84716-85150 , PASA_asmbl_44109: 88084-88388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004668_100 0.0 - - -
2 Hb_149539_010 0.2081706487 - - -
3 Hb_003647_030 0.2123812186 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
4 Hb_123051_020 0.2366811941 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
5 Hb_002407_080 0.2377082531 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
6 Hb_004871_070 0.2399834442 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
7 Hb_001258_060 0.2424582225 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
8 Hb_004242_190 0.2467194922 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
9 Hb_001856_010 0.2528629312 - - DNA binding protein, putative [Ricinus communis]
10 Hb_014549_020 0.2574044834 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
11 Hb_000009_620 0.259843717 - - zinc finger protein, putative [Ricinus communis]
12 Hb_001150_030 0.2624728936 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
13 Hb_011056_020 0.2628048185 transcription factor TF Family: ERF AP2 domain transcription factor RAP2.3, putative [Ricinus communis]
14 Hb_028872_060 0.2640695785 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
15 Hb_003073_180 0.2683576756 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
16 Hb_000645_110 0.2833280271 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
17 Hb_001565_110 0.2852213599 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
18 Hb_001005_070 0.2858265533 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
19 Hb_002489_010 0.2866655725 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
20 Hb_000005_250 0.2869276262 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004668_100 Hb_004668_100 Hb_149539_010 Hb_149539_010 Hb_004668_100--Hb_149539_010 Hb_003647_030 Hb_003647_030 Hb_004668_100--Hb_003647_030 Hb_123051_020 Hb_123051_020 Hb_004668_100--Hb_123051_020 Hb_002407_080 Hb_002407_080 Hb_004668_100--Hb_002407_080 Hb_004871_070 Hb_004871_070 Hb_004668_100--Hb_004871_070 Hb_001258_060 Hb_001258_060 Hb_004668_100--Hb_001258_060 Hb_000637_120 Hb_000637_120 Hb_149539_010--Hb_000637_120 Hb_014549_020 Hb_014549_020 Hb_149539_010--Hb_014549_020 Hb_001100_010 Hb_001100_010 Hb_149539_010--Hb_001100_010 Hb_000316_020 Hb_000316_020 Hb_149539_010--Hb_000316_020 Hb_003754_080 Hb_003754_080 Hb_149539_010--Hb_003754_080 Hb_004242_190 Hb_004242_190 Hb_003647_030--Hb_004242_190 Hb_003647_030--Hb_001258_060 Hb_001150_030 Hb_001150_030 Hb_003647_030--Hb_001150_030 Hb_028872_060 Hb_028872_060 Hb_003647_030--Hb_028872_060 Hb_003120_030 Hb_003120_030 Hb_003647_030--Hb_003120_030 Hb_002489_010 Hb_002489_010 Hb_123051_020--Hb_002489_010 Hb_001329_240 Hb_001329_240 Hb_123051_020--Hb_001329_240 Hb_000009_620 Hb_000009_620 Hb_123051_020--Hb_000009_620 Hb_024505_050 Hb_024505_050 Hb_123051_020--Hb_024505_050 Hb_004348_010 Hb_004348_010 Hb_123051_020--Hb_004348_010 Hb_155123_010 Hb_155123_010 Hb_123051_020--Hb_155123_010 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_002407_080--Hb_001258_060 Hb_002407_080--Hb_000009_620 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040 Hb_000189_640 Hb_000189_640 Hb_004871_070--Hb_000189_640 Hb_134469_010 Hb_134469_010 Hb_004871_070--Hb_134469_010 Hb_002045_130 Hb_002045_130 Hb_004871_070--Hb_002045_130 Hb_000365_020 Hb_000365_020 Hb_004871_070--Hb_000365_020 Hb_005548_010 Hb_005548_010 Hb_004871_070--Hb_005548_010 Hb_003893_010 Hb_003893_010 Hb_004871_070--Hb_003893_010 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_001258_060--Hb_004242_190 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_000805_320 Hb_000805_320 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.838212 0.547318 0 0.206019 1.73319 2.74264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69533 1.50979 4.75895 8.45406 0

CAGE analysis