Hb_001100_010

Information

Type -
Description -
Location Contig1100: 13853-14671
Sequence    

Annotation

kegg
ID mtr:MTR_5g066560
description F-box/FBD/LRR-repeat protein
nr
ID XP_003615322.1
description F-box/FBD/LRR-repeat protein [Medicago truncatula]
swissprot
ID Q9ZV93
description F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1
trembl
ID G7JYG0
description Cytochrome C biogenesis protein ccsA, putative OS=Medicago truncatula GN=MTR_5g066560 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box fbd lrr-repeat protein at4g03220 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001100_010 0.0 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
2 Hb_014549_020 0.1326642845 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
3 Hb_006816_450 0.1601151932 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007304_040 0.1634837647 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
5 Hb_000436_010 0.1727258894 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
6 Hb_000157_010 0.1750180229 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_001766_100 0.1752235729 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001959_160 0.1789571013 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_002756_020 0.1804158742 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
10 Hb_005614_050 0.1810463754 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
11 Hb_000749_250 0.184803509 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
12 Hb_007161_010 0.1865064881 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
13 Hb_002290_040 0.1877601728 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001538_140 0.1892108333 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
15 Hb_152439_020 0.1895478681 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
16 Hb_000094_130 0.1939997472 - - PREDICTED: random slug protein 5 [Jatropha curcas]
17 Hb_001143_090 0.1946020836 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
18 Hb_002498_060 0.2004231426 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004116_200 0.2009523329 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
20 Hb_163950_010 0.2014923376 - - -

Gene co-expression network

sample Hb_001100_010 Hb_001100_010 Hb_014549_020 Hb_014549_020 Hb_001100_010--Hb_014549_020 Hb_006816_450 Hb_006816_450 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_000436_010 Hb_000436_010 Hb_001100_010--Hb_000436_010 Hb_000157_010 Hb_000157_010 Hb_001100_010--Hb_000157_010 Hb_001766_100 Hb_001766_100 Hb_001100_010--Hb_001766_100 Hb_014549_020--Hb_001766_100 Hb_014549_020--Hb_000436_010 Hb_014549_020--Hb_006816_450 Hb_007161_010 Hb_007161_010 Hb_014549_020--Hb_007161_010 Hb_001005_070 Hb_001005_070 Hb_014549_020--Hb_001005_070 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_002498_060 Hb_002498_060 Hb_007304_040--Hb_002498_060 Hb_000094_130 Hb_000094_130 Hb_007304_040--Hb_000094_130 Hb_007304_040--Hb_000157_010 Hb_005614_050 Hb_005614_050 Hb_007304_040--Hb_005614_050 Hb_003680_190 Hb_003680_190 Hb_007304_040--Hb_003680_190 Hb_000436_010--Hb_006816_450 Hb_003878_030 Hb_003878_030 Hb_000436_010--Hb_003878_030 Hb_000723_160 Hb_000723_160 Hb_000436_010--Hb_000723_160 Hb_000436_010--Hb_007161_010 Hb_000179_050 Hb_000179_050 Hb_000436_010--Hb_000179_050 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_002983_030 Hb_002983_030 Hb_001766_100--Hb_002983_030 Hb_000193_240 Hb_000193_240 Hb_001766_100--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_001766_100--Hb_004453_140 Hb_001766_100--Hb_152439_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192534 0.0476692 0.0428201 0.0237944 0.356313 0.245737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327123 0.360114 1.21232 0.374513 0

CAGE analysis