Hb_001766_100

Information

Type -
Description -
Location Contig1766: 83865-95028
Sequence    

Annotation

kegg
ID rcu:RCOM_0611160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002522032.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7R3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0611160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001766_100 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002983_030 0.1607831795 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
3 Hb_014549_020 0.1630127786 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
4 Hb_000193_240 0.1710344662 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
5 Hb_004453_140 0.1746349476 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
6 Hb_152439_020 0.1752148976 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
7 Hb_001100_010 0.1752235729 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
8 Hb_000436_010 0.1772654308 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
9 Hb_001268_400 0.1812165362 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
10 Hb_000157_010 0.1857134377 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_000749_250 0.1894894831 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
12 Hb_163950_010 0.1898416168 - - -
13 Hb_010417_020 0.1930493344 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
14 Hb_096225_020 0.1934410638 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
15 Hb_002391_230 0.1963986236 - - hypothetical protein RCOM_0745080 [Ricinus communis]
16 Hb_011457_170 0.198973985 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
17 Hb_001143_090 0.2006669443 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
18 Hb_000249_130 0.204103589 - - hypothetical protein RCOM_0254640 [Ricinus communis]
19 Hb_000193_250 0.2056953055 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
20 Hb_143629_090 0.205841404 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]

Gene co-expression network

sample Hb_001766_100 Hb_001766_100 Hb_002983_030 Hb_002983_030 Hb_001766_100--Hb_002983_030 Hb_014549_020 Hb_014549_020 Hb_001766_100--Hb_014549_020 Hb_000193_240 Hb_000193_240 Hb_001766_100--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_001766_100--Hb_004453_140 Hb_152439_020 Hb_152439_020 Hb_001766_100--Hb_152439_020 Hb_001100_010 Hb_001100_010 Hb_001766_100--Hb_001100_010 Hb_002983_030--Hb_004453_140 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_014549_020--Hb_001100_010 Hb_000436_010 Hb_000436_010 Hb_014549_020--Hb_000436_010 Hb_006816_450 Hb_006816_450 Hb_014549_020--Hb_006816_450 Hb_007161_010 Hb_007161_010 Hb_014549_020--Hb_007161_010 Hb_001005_070 Hb_001005_070 Hb_014549_020--Hb_001005_070 Hb_000193_240--Hb_004453_140 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_000193_240--Hb_001143_090 Hb_000193_240--Hb_003060_030 Hb_015934_020 Hb_015934_020 Hb_004453_140--Hb_015934_020 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_004453_140--Hb_001143_090 Hb_011457_170 Hb_011457_170 Hb_004453_140--Hb_011457_170 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_001100_010--Hb_006816_450 Hb_007304_040 Hb_007304_040 Hb_001100_010--Hb_007304_040 Hb_001100_010--Hb_000436_010 Hb_001100_010--Hb_000157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.270927 0.027577 0 0 0.21981 0.1579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151282 0.416284 0.746768 0.193176 0

CAGE analysis