Hb_007304_040

Information

Type -
Description -
Location Contig7304: 73319-76765
Sequence    

Annotation

kegg
ID rcu:RCOM_0296620
description polyadenylate-binding protein, putative
nr
ID XP_012074453.1
description PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
swissprot
ID Q05196
description Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3
trembl
ID A0A067KIH3
description Polyadenylate-binding protein OS=Jatropha curcas GN=JCGZ_09997 PE=3 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55928: 74621-74909 , PASA_asmbl_55929: 75770-76381 , PASA_asmbl_55930: 76532-76680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_040 0.0 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
2 Hb_001100_010 0.1634837647 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
3 Hb_002498_060 0.1678027236 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000094_130 0.1701375016 - - PREDICTED: random slug protein 5 [Jatropha curcas]
5 Hb_000157_010 0.1778353479 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_005614_050 0.188061798 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
7 Hb_003680_190 0.1883346574 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
8 Hb_001897_040 0.1901991536 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
9 Hb_005548_010 0.1919909869 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
10 Hb_001856_020 0.192633384 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
11 Hb_003551_050 0.1941241324 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
12 Hb_002045_130 0.1951013663 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
13 Hb_005188_090 0.1951694978 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
14 Hb_000099_200 0.1952768078 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004410_100 0.197532632 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
16 Hb_007181_070 0.198101203 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
17 Hb_000162_040 0.199717003 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
18 Hb_002756_020 0.2032198906 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
19 Hb_007161_010 0.2034581043 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
20 Hb_000189_640 0.204367971 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]

Gene co-expression network

sample Hb_007304_040 Hb_007304_040 Hb_001100_010 Hb_001100_010 Hb_007304_040--Hb_001100_010 Hb_002498_060 Hb_002498_060 Hb_007304_040--Hb_002498_060 Hb_000094_130 Hb_000094_130 Hb_007304_040--Hb_000094_130 Hb_000157_010 Hb_000157_010 Hb_007304_040--Hb_000157_010 Hb_005614_050 Hb_005614_050 Hb_007304_040--Hb_005614_050 Hb_003680_190 Hb_003680_190 Hb_007304_040--Hb_003680_190 Hb_014549_020 Hb_014549_020 Hb_001100_010--Hb_014549_020 Hb_006816_450 Hb_006816_450 Hb_001100_010--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_001100_010--Hb_000436_010 Hb_001100_010--Hb_000157_010 Hb_001766_100 Hb_001766_100 Hb_001100_010--Hb_001766_100 Hb_004306_060 Hb_004306_060 Hb_002498_060--Hb_004306_060 Hb_152439_020 Hb_152439_020 Hb_002498_060--Hb_152439_020 Hb_002498_060--Hb_000157_010 Hb_004128_180 Hb_004128_180 Hb_002498_060--Hb_004128_180 Hb_000236_140 Hb_000236_140 Hb_002498_060--Hb_000236_140 Hb_001856_020 Hb_001856_020 Hb_002498_060--Hb_001856_020 Hb_005188_090 Hb_005188_090 Hb_000094_130--Hb_005188_090 Hb_000327_220 Hb_000327_220 Hb_000094_130--Hb_000327_220 Hb_004410_100 Hb_004410_100 Hb_000094_130--Hb_004410_100 Hb_001277_090 Hb_001277_090 Hb_000094_130--Hb_001277_090 Hb_000094_130--Hb_000236_140 Hb_005043_010 Hb_005043_010 Hb_000094_130--Hb_005043_010 Hb_000157_010--Hb_152439_020 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_007161_010 Hb_007161_010 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_000363_200 Hb_000363_200 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_006594_020 Hb_006594_020 Hb_005614_050--Hb_006594_020 Hb_000690_050 Hb_000690_050 Hb_003680_190--Hb_000690_050 Hb_000629_120 Hb_000629_120 Hb_003680_190--Hb_000629_120 Hb_000363_160 Hb_000363_160 Hb_003680_190--Hb_000363_160 Hb_000359_010 Hb_000359_010 Hb_003680_190--Hb_000359_010 Hb_000898_050 Hb_000898_050 Hb_003680_190--Hb_000898_050 Hb_000297_040 Hb_000297_040 Hb_003680_190--Hb_000297_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.917311 0.227516 0.539141 1.28195 2.41941 1.83417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76211 1.76957 6.32657 2.06172 0.038526

CAGE analysis