Hb_004871_070

Information

Type -
Description -
Location Contig4871: 54797-59626
Sequence    

Annotation

kegg
ID rcu:RCOM_1515750
description hypothetical protein
nr
ID XP_012070316.1
description PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L526
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02625 PE=4 SV=1
Gene Ontology
ID GO:0008233
description nuclear factor 1 a-type isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45063: 54995-59558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004871_070 0.0 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
2 Hb_000189_640 0.1816235247 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
3 Hb_134469_010 0.1891759046 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
4 Hb_002045_130 0.1900351095 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
5 Hb_000365_020 0.1991511608 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
6 Hb_005548_010 0.1995728892 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
7 Hb_003893_010 0.2006126739 - - hypothetical protein M569_16374 [Genlisea aurea]
8 Hb_090855_010 0.2011978236 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_002842_020 0.2034850252 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
10 Hb_010480_030 0.2051417654 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
11 Hb_006642_040 0.2084182918 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
12 Hb_004162_100 0.2099545409 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000076_140 0.2107271914 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001246_030 0.2112621345 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
15 Hb_001258_060 0.213452635 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
16 Hb_002027_120 0.215579585 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
17 Hb_002489_010 0.2156387013 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
18 Hb_007943_130 0.2170156754 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
19 Hb_000221_270 0.2174071906 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
20 Hb_000599_350 0.219414833 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004871_070 Hb_004871_070 Hb_000189_640 Hb_000189_640 Hb_004871_070--Hb_000189_640 Hb_134469_010 Hb_134469_010 Hb_004871_070--Hb_134469_010 Hb_002045_130 Hb_002045_130 Hb_004871_070--Hb_002045_130 Hb_000365_020 Hb_000365_020 Hb_004871_070--Hb_000365_020 Hb_005548_010 Hb_005548_010 Hb_004871_070--Hb_005548_010 Hb_003893_010 Hb_003893_010 Hb_004871_070--Hb_003893_010 Hb_002842_020 Hb_002842_020 Hb_000189_640--Hb_002842_020 Hb_000189_640--Hb_003893_010 Hb_000189_640--Hb_002045_130 Hb_000617_260 Hb_000617_260 Hb_000189_640--Hb_000617_260 Hb_000291_110 Hb_000291_110 Hb_000189_640--Hb_000291_110 Hb_000602_010 Hb_000602_010 Hb_000189_640--Hb_000602_010 Hb_001427_070 Hb_001427_070 Hb_134469_010--Hb_001427_070 Hb_000733_210 Hb_000733_210 Hb_134469_010--Hb_000733_210 Hb_009701_010 Hb_009701_010 Hb_134469_010--Hb_009701_010 Hb_007590_070 Hb_007590_070 Hb_134469_010--Hb_007590_070 Hb_011311_020 Hb_011311_020 Hb_134469_010--Hb_011311_020 Hb_000140_480 Hb_000140_480 Hb_134469_010--Hb_000140_480 Hb_004116_200 Hb_004116_200 Hb_002045_130--Hb_004116_200 Hb_002045_130--Hb_000365_020 Hb_002045_130--Hb_003893_010 Hb_001500_040 Hb_001500_040 Hb_002045_130--Hb_001500_040 Hb_002489_010 Hb_002489_010 Hb_002045_130--Hb_002489_010 Hb_000898_040 Hb_000898_040 Hb_000365_020--Hb_000898_040 Hb_004046_020 Hb_004046_020 Hb_000365_020--Hb_004046_020 Hb_002217_300 Hb_002217_300 Hb_000365_020--Hb_002217_300 Hb_001344_010 Hb_001344_010 Hb_000365_020--Hb_001344_010 Hb_000169_090 Hb_000169_090 Hb_000365_020--Hb_000169_090 Hb_000365_020--Hb_005548_010 Hb_000221_270 Hb_000221_270 Hb_005548_010--Hb_000221_270 Hb_005625_020 Hb_005625_020 Hb_005548_010--Hb_005625_020 Hb_000069_460 Hb_000069_460 Hb_005548_010--Hb_000069_460 Hb_003687_240 Hb_003687_240 Hb_005548_010--Hb_003687_240 Hb_001635_060 Hb_001635_060 Hb_005548_010--Hb_001635_060 Hb_001959_210 Hb_001959_210 Hb_003893_010--Hb_001959_210 Hb_000200_050 Hb_000200_050 Hb_003893_010--Hb_000200_050 Hb_000483_200 Hb_000483_200 Hb_003893_010--Hb_000483_200 Hb_003893_010--Hb_001500_040 Hb_003893_010--Hb_000602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8527 6.83338 1.78474 15.5167 22.7611 17.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3884 11.7849 56.32 58.9708 4.43943

CAGE analysis