Hb_000069_460

Information

Type -
Description -
Location Contig69: 474625-479605
Sequence    

Annotation

kegg
ID rcu:RCOM_0719160
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012083226.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
swissprot
ID Q9FFQ1
description DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2
trembl
ID A0A067K887
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14271 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 31-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54241: 475371-476650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_460 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
2 Hb_008066_010 0.0796869974 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
3 Hb_000221_270 0.0874985789 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
4 Hb_000110_160 0.0877507593 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001329_300 0.091879334 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
6 Hb_000051_110 0.1036800241 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000446_090 0.1042474237 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
8 Hb_002769_050 0.1042501659 - - PREDICTED: endophilin-A1 [Jatropha curcas]
9 Hb_015306_020 0.1044857092 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
10 Hb_000567_260 0.1083274346 - - BnaA09g41440D [Brassica napus]
11 Hb_001159_100 0.1096516055 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
12 Hb_004046_010 0.1103793203 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
13 Hb_005548_010 0.1111161763 - - PREDICTED: DNA repair protein RAD51 homolog 2 [Jatropha curcas]
14 Hb_029584_130 0.111819714 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
15 Hb_007951_050 0.1118692609 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000635_220 0.1121751685 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
17 Hb_000614_230 0.1123082962 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
18 Hb_008695_210 0.1127134429 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
19 Hb_009111_050 0.1135870351 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
20 Hb_003861_080 0.1142754734 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000069_460 Hb_000069_460 Hb_008066_010 Hb_008066_010 Hb_000069_460--Hb_008066_010 Hb_000221_270 Hb_000221_270 Hb_000069_460--Hb_000221_270 Hb_000110_160 Hb_000110_160 Hb_000069_460--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_000069_460--Hb_001329_300 Hb_000051_110 Hb_000051_110 Hb_000069_460--Hb_000051_110 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_008066_010--Hb_000110_160 Hb_008066_010--Hb_001329_300 Hb_010710_030 Hb_010710_030 Hb_008066_010--Hb_010710_030 Hb_008066_010--Hb_000221_270 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_000221_270--Hb_000051_110 Hb_000221_270--Hb_010710_030 Hb_000110_160--Hb_001329_300 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_000051_110--Hb_008066_010 Hb_001604_010 Hb_001604_010 Hb_000051_110--Hb_001604_010 Hb_009111_050 Hb_009111_050 Hb_000051_110--Hb_009111_050 Hb_000190_140 Hb_000190_140 Hb_000051_110--Hb_000190_140 Hb_000661_170 Hb_000661_170 Hb_000446_090--Hb_000661_170 Hb_004046_010 Hb_004046_010 Hb_000446_090--Hb_004046_010 Hb_001047_020 Hb_001047_020 Hb_000446_090--Hb_001047_020 Hb_000446_090--Hb_000190_140 Hb_000446_090--Hb_000110_160 Hb_015306_020 Hb_015306_020 Hb_000446_090--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.4608 13.2984 7.31573 9.00753 21.5521 56.9337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.9559 29.7805 71.1861 24.6895 11.783

CAGE analysis