Hb_000733_210

Information

Type -
Description -
Location Contig733: 180562-182620
Sequence    

Annotation

kegg
ID loa:LOAG_15310
description hypothetical protein
nr
ID CAJ18121.1
description putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
swissprot
ID -
description -
trembl
ID Q4A1P3
description Putative serine/threonine protein phosphatase (Fragment) OS=Angiostrongylus costaricensis GN=pph-1 PE=2 SV=1
Gene Ontology
ID GO:0000164
description serine threonine-protein phosphatase pp1 isozyme 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000733_210 0.0 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
2 Hb_134469_010 0.1255030922 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
3 Hb_007590_070 0.1565013084 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
4 Hb_002666_020 0.1696053463 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
5 Hb_002007_240 0.1703329391 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
6 Hb_001427_070 0.1727196464 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
7 Hb_001636_020 0.1732254036 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
8 Hb_009701_010 0.1764464912 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
9 Hb_073562_010 0.1771507525 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
10 Hb_002110_030 0.1792862803 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
11 Hb_010029_020 0.1801364337 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
12 Hb_011311_020 0.181281418 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
13 Hb_001524_090 0.1841440598 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
14 Hb_006586_030 0.1842290359 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
15 Hb_002827_020 0.1868600541 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
16 Hb_000853_120 0.1914637211 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]
17 Hb_003609_020 0.1919618754 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
18 Hb_011716_090 0.1928798584 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
19 Hb_000432_060 0.1928918899 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_007307_030 0.1945321448 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000733_210 Hb_000733_210 Hb_134469_010 Hb_134469_010 Hb_000733_210--Hb_134469_010 Hb_007590_070 Hb_007590_070 Hb_000733_210--Hb_007590_070 Hb_002666_020 Hb_002666_020 Hb_000733_210--Hb_002666_020 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_001427_070 Hb_001427_070 Hb_000733_210--Hb_001427_070 Hb_001636_020 Hb_001636_020 Hb_000733_210--Hb_001636_020 Hb_134469_010--Hb_001427_070 Hb_009701_010 Hb_009701_010 Hb_134469_010--Hb_009701_010 Hb_134469_010--Hb_007590_070 Hb_011311_020 Hb_011311_020 Hb_134469_010--Hb_011311_020 Hb_000140_480 Hb_000140_480 Hb_134469_010--Hb_000140_480 Hb_090855_010 Hb_090855_010 Hb_007590_070--Hb_090855_010 Hb_010874_020 Hb_010874_020 Hb_007590_070--Hb_010874_020 Hb_000193_140 Hb_000193_140 Hb_007590_070--Hb_000193_140 Hb_010427_010 Hb_010427_010 Hb_007590_070--Hb_010427_010 Hb_000853_400 Hb_000853_400 Hb_002666_020--Hb_000853_400 Hb_002666_020--Hb_001636_020 Hb_004724_120 Hb_004724_120 Hb_002666_020--Hb_004724_120 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_002666_020--Hb_000193_140 Hb_002007_240--Hb_009701_010 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030 Hb_001427_070--Hb_000140_480 Hb_001761_130 Hb_001761_130 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_001427_070--Hb_002110_030 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_000406_060 Hb_000406_060 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59357 5.09271 0.637582 1.60917 2.36771 4.67471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.694005 1.33952 4.95819 8.33951 0.600483

CAGE analysis