Hb_000193_140

Information

Type -
Description -
Location Contig193: 98766-109165
Sequence    

Annotation

kegg
ID rcu:RCOM_0362080
description hypothetical protein
nr
ID XP_002531144.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9SYS5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0362080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19235: 99794-100381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010427_010 0.1200144801 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
3 Hb_007064_010 0.1295011761 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
4 Hb_000189_110 0.1428802955 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
5 Hb_090855_010 0.1517993256 - - Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_004137_060 0.1543730072 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
7 Hb_000574_070 0.1557272696 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
8 Hb_002400_240 0.1598275338 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
9 Hb_007590_070 0.1600715639 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
10 Hb_141547_010 0.1615459556 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
11 Hb_003449_070 0.1627880223 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
12 Hb_027402_140 0.1637112956 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
13 Hb_001472_090 0.1661933921 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_000544_050 0.1664110647 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_001913_060 0.1687335949 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
16 Hb_001930_010 0.1711656975 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
17 Hb_007904_030 0.1720812207 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
18 Hb_000313_060 0.1726650049 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
19 Hb_002035_080 0.1733997524 - - unnamed protein product [Vitis vinifera]
20 Hb_007904_080 0.1734427241 - - hypothetical protein JCGZ_17880 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_140 Hb_000193_140 Hb_010427_010 Hb_010427_010 Hb_000193_140--Hb_010427_010 Hb_007064_010 Hb_007064_010 Hb_000193_140--Hb_007064_010 Hb_000189_110 Hb_000189_110 Hb_000193_140--Hb_000189_110 Hb_090855_010 Hb_090855_010 Hb_000193_140--Hb_090855_010 Hb_004137_060 Hb_004137_060 Hb_000193_140--Hb_004137_060 Hb_000574_070 Hb_000574_070 Hb_000193_140--Hb_000574_070 Hb_006660_010 Hb_006660_010 Hb_010427_010--Hb_006660_010 Hb_003449_070 Hb_003449_070 Hb_010427_010--Hb_003449_070 Hb_011310_160 Hb_011310_160 Hb_010427_010--Hb_011310_160 Hb_000212_310 Hb_000212_310 Hb_010427_010--Hb_000212_310 Hb_003294_090 Hb_003294_090 Hb_010427_010--Hb_003294_090 Hb_005679_050 Hb_005679_050 Hb_010427_010--Hb_005679_050 Hb_007064_010--Hb_000189_110 Hb_002780_010 Hb_002780_010 Hb_007064_010--Hb_002780_010 Hb_140627_020 Hb_140627_020 Hb_007064_010--Hb_140627_020 Hb_002311_100 Hb_002311_100 Hb_007064_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_007064_010--Hb_002316_160 Hb_001268_380 Hb_001268_380 Hb_000189_110--Hb_001268_380 Hb_001472_090 Hb_001472_090 Hb_000189_110--Hb_001472_090 Hb_005656_040 Hb_005656_040 Hb_000189_110--Hb_005656_040 Hb_009767_080 Hb_009767_080 Hb_000189_110--Hb_009767_080 Hb_000803_260 Hb_000803_260 Hb_000189_110--Hb_000803_260 Hb_000318_390 Hb_000318_390 Hb_000189_110--Hb_000318_390 Hb_007590_070 Hb_007590_070 Hb_090855_010--Hb_007590_070 Hb_010874_020 Hb_010874_020 Hb_090855_010--Hb_010874_020 Hb_000230_080 Hb_000230_080 Hb_090855_010--Hb_000230_080 Hb_001930_010 Hb_001930_010 Hb_090855_010--Hb_001930_010 Hb_001439_140 Hb_001439_140 Hb_090855_010--Hb_001439_140 Hb_000206_250 Hb_000206_250 Hb_090855_010--Hb_000206_250 Hb_010417_050 Hb_010417_050 Hb_004137_060--Hb_010417_050 Hb_000009_210 Hb_000009_210 Hb_004137_060--Hb_000009_210 Hb_014267_010 Hb_014267_010 Hb_004137_060--Hb_014267_010 Hb_000390_070 Hb_000390_070 Hb_004137_060--Hb_000390_070 Hb_004137_060--Hb_000574_070 Hb_000244_160 Hb_000244_160 Hb_004137_060--Hb_000244_160 Hb_000574_070--Hb_001472_090 Hb_003488_030 Hb_003488_030 Hb_000574_070--Hb_003488_030 Hb_001700_040 Hb_001700_040 Hb_000574_070--Hb_001700_040 Hb_000544_050 Hb_000544_050 Hb_000574_070--Hb_000544_050 Hb_001913_060 Hb_001913_060 Hb_000574_070--Hb_001913_060 Hb_000574_070--Hb_010417_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31747 1.48512 0.20063 0.808143 1.06852 2.2592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160436 0.189361 2.04035 1.43629 0.903093

CAGE analysis