Hb_007064_010

Information

Type -
Description -
Location Contig7064: 402-10843
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12110g
description POPTRDRAFT_908303; hypothetical protein
nr
ID XP_012078025.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
swissprot
ID Q9FK93
description Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=1 SV=1
trembl
ID A0A067KMH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007064_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
2 Hb_000189_110 0.1018449093 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
3 Hb_000193_140 0.1295011761 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002780_010 0.1396860712 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
5 Hb_140627_020 0.1416010778 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
6 Hb_002311_100 0.142157421 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
7 Hb_002316_160 0.1440539199 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
8 Hb_010874_040 0.1475671734 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
9 Hb_001916_070 0.1482133497 - - PREDICTED: phytochrome C [Jatropha curcas]
10 Hb_001268_380 0.1488679053 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
11 Hb_005656_040 0.1503920027 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_004224_020 0.1511809084 - - PREDICTED: uncharacterized protein LOC105643786 [Jatropha curcas]
13 Hb_000432_060 0.1517385324 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_000574_070 0.1538273712 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Jatropha curcas]
15 Hb_009486_200 0.1542464302 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_009898_010 0.1551688773 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
17 Hb_168697_010 0.1555092682 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
18 Hb_000556_220 0.1567015594 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
19 Hb_000544_050 0.1568129544 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
20 Hb_001472_090 0.158587834 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007064_010 Hb_007064_010 Hb_000189_110 Hb_000189_110 Hb_007064_010--Hb_000189_110 Hb_000193_140 Hb_000193_140 Hb_007064_010--Hb_000193_140 Hb_002780_010 Hb_002780_010 Hb_007064_010--Hb_002780_010 Hb_140627_020 Hb_140627_020 Hb_007064_010--Hb_140627_020 Hb_002311_100 Hb_002311_100 Hb_007064_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_007064_010--Hb_002316_160 Hb_001268_380 Hb_001268_380 Hb_000189_110--Hb_001268_380 Hb_001472_090 Hb_001472_090 Hb_000189_110--Hb_001472_090 Hb_005656_040 Hb_005656_040 Hb_000189_110--Hb_005656_040 Hb_009767_080 Hb_009767_080 Hb_000189_110--Hb_009767_080 Hb_000803_260 Hb_000803_260 Hb_000189_110--Hb_000803_260 Hb_000318_390 Hb_000318_390 Hb_000189_110--Hb_000318_390 Hb_010427_010 Hb_010427_010 Hb_000193_140--Hb_010427_010 Hb_000193_140--Hb_000189_110 Hb_090855_010 Hb_090855_010 Hb_000193_140--Hb_090855_010 Hb_004137_060 Hb_004137_060 Hb_000193_140--Hb_004137_060 Hb_000574_070 Hb_000574_070 Hb_000193_140--Hb_000574_070 Hb_002007_160 Hb_002007_160 Hb_002780_010--Hb_002007_160 Hb_009898_010 Hb_009898_010 Hb_002780_010--Hb_009898_010 Hb_002780_010--Hb_009767_080 Hb_000321_150 Hb_000321_150 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070 Hb_002780_010--Hb_001268_380 Hb_000556_220 Hb_000556_220 Hb_140627_020--Hb_000556_220 Hb_002235_200 Hb_002235_200 Hb_140627_020--Hb_002235_200 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_140627_020--Hb_005656_040 Hb_002311_100--Hb_005656_040 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_000130_490 Hb_000130_490 Hb_002316_160--Hb_000130_490 Hb_005486_030 Hb_005486_030 Hb_002316_160--Hb_005486_030 Hb_001999_090 Hb_001999_090 Hb_002316_160--Hb_001999_090 Hb_002316_160--Hb_009898_010 Hb_006718_020 Hb_006718_020 Hb_002316_160--Hb_006718_020 Hb_001865_070 Hb_001865_070 Hb_002316_160--Hb_001865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.640516 1.63163 0.285568 0.652864 0.547711 1.61768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.217365 0.290753 1.78541 1.12237 1.15778

CAGE analysis