Hb_000189_110

Information

Type -
Description -
Location Contig189: 128592-130556
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05510g
description hypothetical protein
nr
ID XP_012089263.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
swissprot
ID Q9SR01
description Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2 SV=1
trembl
ID A0A067JVW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23497 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
2 Hb_001268_380 0.0841757034 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
3 Hb_001472_090 0.0881184913 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_005656_040 0.0911716198 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_009767_080 0.0926172711 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_000803_260 0.0929643935 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
7 Hb_000318_390 0.0933752414 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
8 Hb_000890_050 0.0938915441 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
9 Hb_002311_100 0.0946209795 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
10 Hb_001967_030 0.0979620886 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
11 Hb_002780_010 0.098553743 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
12 Hb_009898_010 0.1000059178 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
13 Hb_001913_060 0.1005469078 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
14 Hb_000540_060 0.1015549645 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
15 Hb_014267_010 0.1016180657 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
16 Hb_007904_030 0.1018124982 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
17 Hb_007064_010 0.1018449093 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
18 Hb_002316_160 0.1021353918 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
19 Hb_001862_180 0.1049078201 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
20 Hb_000684_250 0.1066985302 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_110 Hb_000189_110 Hb_001268_380 Hb_001268_380 Hb_000189_110--Hb_001268_380 Hb_001472_090 Hb_001472_090 Hb_000189_110--Hb_001472_090 Hb_005656_040 Hb_005656_040 Hb_000189_110--Hb_005656_040 Hb_009767_080 Hb_009767_080 Hb_000189_110--Hb_009767_080 Hb_000803_260 Hb_000803_260 Hb_000189_110--Hb_000803_260 Hb_000318_390 Hb_000318_390 Hb_000189_110--Hb_000318_390 Hb_004228_020 Hb_004228_020 Hb_001268_380--Hb_004228_020 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_002780_010 Hb_002780_010 Hb_001268_380--Hb_002780_010 Hb_005486_030 Hb_005486_030 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_000574_070 Hb_000574_070 Hb_001472_090--Hb_000574_070 Hb_001472_090--Hb_000803_260 Hb_014267_010 Hb_014267_010 Hb_001472_090--Hb_014267_010 Hb_000684_250 Hb_000684_250 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_002311_100 Hb_002311_100 Hb_005656_040--Hb_002311_100 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_009767_080--Hb_000890_050 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000803_260--Hb_000684_250 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000318_390--Hb_000890_050 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985939 1.49368 0.31785 0.550115 0.777283 1.35037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368242 0.380286 1.3043 1.03042 1.18577

CAGE analysis