Hb_002666_020

Information

Type -
Description -
Location Contig2666: 5459-14991
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05980g
description VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1
nr
ID XP_006375292.1
description VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
swissprot
ID O82213
description Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1
trembl
ID B9MUW8
description VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 OS=Populus trichocarpa GN=POPTR_0014s05980g PE=4 SV=1
Gene Ontology
ID GO:0005789
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002666_020 0.0 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
2 Hb_000733_210 0.1696053463 - - putative serine/threonine protein phosphatase [Angiostrongylus costaricensis]
3 Hb_000853_400 0.1826171971 - - PREDICTED: CTP synthase [Jatropha curcas]
4 Hb_001636_020 0.2073356324 - - Serine/threonine-protein kinase PBS1 [Theobroma cacao]
5 Hb_004724_120 0.2135865298 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
6 Hb_000544_050 0.2153251507 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_000193_140 0.2171513228 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010427_010 0.2181449237 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06191 [Jatropha curcas]
9 Hb_001524_090 0.2190891718 - - PREDICTED: uncharacterized protein LOC105113929 [Populus euphratica]
10 Hb_054586_020 0.2223601469 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
11 Hb_054885_020 0.2223741053 - - -
12 Hb_008494_050 0.2225093457 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
13 Hb_002693_060 0.2245495666 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_011716_090 0.2249108899 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
15 Hb_004462_010 0.2286398794 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
16 Hb_134469_010 0.2328352581 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
17 Hb_003073_170 0.2341257378 - - -
18 Hb_062007_010 0.2349817486 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
19 Hb_000740_110 0.2361771376 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
20 Hb_007064_010 0.2370837559 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]

Gene co-expression network

sample Hb_002666_020 Hb_002666_020 Hb_000733_210 Hb_000733_210 Hb_002666_020--Hb_000733_210 Hb_000853_400 Hb_000853_400 Hb_002666_020--Hb_000853_400 Hb_001636_020 Hb_001636_020 Hb_002666_020--Hb_001636_020 Hb_004724_120 Hb_004724_120 Hb_002666_020--Hb_004724_120 Hb_000544_050 Hb_000544_050 Hb_002666_020--Hb_000544_050 Hb_000193_140 Hb_000193_140 Hb_002666_020--Hb_000193_140 Hb_134469_010 Hb_134469_010 Hb_000733_210--Hb_134469_010 Hb_007590_070 Hb_007590_070 Hb_000733_210--Hb_007590_070 Hb_002007_240 Hb_002007_240 Hb_000733_210--Hb_002007_240 Hb_001427_070 Hb_001427_070 Hb_000733_210--Hb_001427_070 Hb_000733_210--Hb_001636_020 Hb_010427_010 Hb_010427_010 Hb_000853_400--Hb_010427_010 Hb_000270_520 Hb_000270_520 Hb_000853_400--Hb_000270_520 Hb_012738_030 Hb_012738_030 Hb_000853_400--Hb_012738_030 Hb_003449_070 Hb_003449_070 Hb_000853_400--Hb_003449_070 Hb_005976_050 Hb_005976_050 Hb_000853_400--Hb_005976_050 Hb_000212_310 Hb_000212_310 Hb_000853_400--Hb_000212_310 Hb_002972_020 Hb_002972_020 Hb_001636_020--Hb_002972_020 Hb_000406_060 Hb_000406_060 Hb_001636_020--Hb_000406_060 Hb_000021_030 Hb_000021_030 Hb_001636_020--Hb_000021_030 Hb_001009_080 Hb_001009_080 Hb_001636_020--Hb_001009_080 Hb_001636_020--Hb_001427_070 Hb_002836_100 Hb_002836_100 Hb_001636_020--Hb_002836_100 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_000130_060 Hb_000130_060 Hb_004724_120--Hb_000130_060 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_000574_070 Hb_000574_070 Hb_000544_050--Hb_000574_070 Hb_085781_020 Hb_085781_020 Hb_000544_050--Hb_085781_020 Hb_001913_060 Hb_001913_060 Hb_000544_050--Hb_001913_060 Hb_003060_060 Hb_003060_060 Hb_000544_050--Hb_003060_060 Hb_001357_270 Hb_001357_270 Hb_000544_050--Hb_001357_270 Hb_000723_220 Hb_000723_220 Hb_000544_050--Hb_000723_220 Hb_000193_140--Hb_010427_010 Hb_007064_010 Hb_007064_010 Hb_000193_140--Hb_007064_010 Hb_000189_110 Hb_000189_110 Hb_000193_140--Hb_000189_110 Hb_090855_010 Hb_090855_010 Hb_000193_140--Hb_090855_010 Hb_004137_060 Hb_004137_060 Hb_000193_140--Hb_004137_060 Hb_000193_140--Hb_000574_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48986 4.72213 0.458661 3.49932 1.49324 8.09004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.737409 0.474643 4.44794 7.87995 0.825284

CAGE analysis