Hb_000130_060

Information

Type -
Description -
Location Contig130: 30418-33625
Sequence    

Annotation

kegg
ID sly:101265754
description uncharacterized LOC101265754
nr
ID XP_012080915.1
description PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08873: 33068-33544
cDNA
(Sanger)
(ID:Location)		 039_K21r.ab1: 22408-34067

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_060 0.0 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
2 Hb_000362_110 0.1447185705 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
3 Hb_002370_030 0.1822076442 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
4 Hb_026337_010 0.182280503 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
5 Hb_003640_030 0.1838460458 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
6 Hb_004724_120 0.1881678861 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
7 Hb_007426_140 0.1924164592 - - ornithine aminotransferase, putative [Ricinus communis]
8 Hb_001780_150 0.1927193694 - - ceramidase, putative [Ricinus communis]
9 Hb_001900_060 0.2025060345 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
10 Hb_028115_010 0.2032877289 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002836_100 0.2058885371 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
12 Hb_004040_040 0.2062067357 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
13 Hb_000977_010 0.2067500056 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_033772_070 0.207103422 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
15 Hb_007785_010 0.2110347554 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_000401_010 0.2136683296 - - SAB, putative [Ricinus communis]
17 Hb_006717_070 0.2139793372 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
18 Hb_000395_220 0.2147714749 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
19 Hb_003972_040 0.2196779692 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
20 Hb_000235_050 0.2219719082 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000130_060 Hb_000130_060 Hb_000362_110 Hb_000362_110 Hb_000130_060--Hb_000362_110 Hb_002370_030 Hb_002370_030 Hb_000130_060--Hb_002370_030 Hb_026337_010 Hb_026337_010 Hb_000130_060--Hb_026337_010 Hb_003640_030 Hb_003640_030 Hb_000130_060--Hb_003640_030 Hb_004724_120 Hb_004724_120 Hb_000130_060--Hb_004724_120 Hb_007426_140 Hb_007426_140 Hb_000130_060--Hb_007426_140 Hb_006717_070 Hb_006717_070 Hb_000362_110--Hb_006717_070 Hb_000395_220 Hb_000395_220 Hb_000362_110--Hb_000395_220 Hb_001780_150 Hb_001780_150 Hb_000362_110--Hb_001780_150 Hb_001799_190 Hb_001799_190 Hb_000362_110--Hb_001799_190 Hb_000362_110--Hb_007426_140 Hb_000977_010 Hb_000977_010 Hb_000362_110--Hb_000977_010 Hb_004040_040 Hb_004040_040 Hb_002370_030--Hb_004040_040 Hb_150346_010 Hb_150346_010 Hb_002370_030--Hb_150346_010 Hb_062558_010 Hb_062558_010 Hb_002370_030--Hb_062558_010 Hb_027136_010 Hb_027136_010 Hb_002370_030--Hb_027136_010 Hb_148131_010 Hb_148131_010 Hb_002370_030--Hb_148131_010 Hb_000260_780 Hb_000260_780 Hb_002370_030--Hb_000260_780 Hb_141212_010 Hb_141212_010 Hb_026337_010--Hb_141212_010 Hb_063480_020 Hb_063480_020 Hb_026337_010--Hb_063480_020 Hb_026337_010--Hb_002370_030 Hb_000679_200 Hb_000679_200 Hb_026337_010--Hb_000679_200 Hb_001278_040 Hb_001278_040 Hb_026337_010--Hb_001278_040 Hb_002903_130 Hb_002903_130 Hb_003640_030--Hb_002903_130 Hb_003640_030--Hb_000362_110 Hb_020178_060 Hb_020178_060 Hb_003640_030--Hb_020178_060 Hb_000283_150 Hb_000283_150 Hb_003640_030--Hb_000283_150 Hb_003640_030--Hb_000977_010 Hb_000061_380 Hb_000061_380 Hb_003640_030--Hb_000061_380 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_007426_140--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_075315_010 Hb_075315_010 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114344 0.522548 0.175941 0.545663 0.250769 0.521484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0657417 0.103388 0 0.961842 0.103972

CAGE analysis