Hb_141212_010

Information

Type -
Description -
Location Contig141212: 1-510
Sequence    

Annotation

kegg
ID tcc:TCM_025433
description hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID A0A061F697
description Uncharacterized protein OS=Theobroma cacao GN=TCM_025433 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11147: 190-433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141212_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_026337_010 0.1550854378 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
3 Hb_063480_020 0.1565514513 - - unnamed protein product [Vitis vinifera]
4 Hb_054586_020 0.1982388929 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
5 Hb_054885_020 0.2130721534 - - -
6 Hb_097347_010 0.2166159138 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
7 Hb_049160_010 0.2182296788 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_012180_040 0.2204958584 - - hypothetical protein VITISV_042517 [Vitis vinifera]
9 Hb_090545_010 0.2245615824 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
10 Hb_004228_100 0.2248987203 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000589_130 0.2257855901 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
12 Hb_084470_010 0.226173357 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_006913_050 0.2342876407 - - -
14 Hb_000787_190 0.2346852371 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
15 Hb_001780_090 0.2358586992 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
16 Hb_002666_020 0.2376640691 - - VAMP/SYNAPTOBREVIN-ASSOCIATED protein 27-1 [Populus trichocarpa]
17 Hb_012180_030 0.238444162 - - unnamed protein product [Vitis vinifera]
18 Hb_000406_110 0.2398765689 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
19 Hb_000521_270 0.2403185358 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
20 Hb_007186_020 0.2426376079 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]

Gene co-expression network

sample Hb_141212_010 Hb_141212_010 Hb_026337_010 Hb_026337_010 Hb_141212_010--Hb_026337_010 Hb_063480_020 Hb_063480_020 Hb_141212_010--Hb_063480_020 Hb_054586_020 Hb_054586_020 Hb_141212_010--Hb_054586_020 Hb_054885_020 Hb_054885_020 Hb_141212_010--Hb_054885_020 Hb_097347_010 Hb_097347_010 Hb_141212_010--Hb_097347_010 Hb_049160_010 Hb_049160_010 Hb_141212_010--Hb_049160_010 Hb_026337_010--Hb_063480_020 Hb_000130_060 Hb_000130_060 Hb_026337_010--Hb_000130_060 Hb_002370_030 Hb_002370_030 Hb_026337_010--Hb_002370_030 Hb_000679_200 Hb_000679_200 Hb_026337_010--Hb_000679_200 Hb_001278_040 Hb_001278_040 Hb_026337_010--Hb_001278_040 Hb_063480_020--Hb_054885_020 Hb_000406_110 Hb_000406_110 Hb_063480_020--Hb_000406_110 Hb_000537_140 Hb_000537_140 Hb_063480_020--Hb_000537_140 Hb_006588_150 Hb_006588_150 Hb_063480_020--Hb_006588_150 Hb_002837_110 Hb_002837_110 Hb_063480_020--Hb_002837_110 Hb_063480_020--Hb_049160_010 Hb_001386_140 Hb_001386_140 Hb_054586_020--Hb_001386_140 Hb_006132_100 Hb_006132_100 Hb_054586_020--Hb_006132_100 Hb_010565_010 Hb_010565_010 Hb_054586_020--Hb_010565_010 Hb_058702_010 Hb_058702_010 Hb_054586_020--Hb_058702_010 Hb_007333_040 Hb_007333_040 Hb_054586_020--Hb_007333_040 Hb_030328_010 Hb_030328_010 Hb_054586_020--Hb_030328_010 Hb_002375_110 Hb_002375_110 Hb_054885_020--Hb_002375_110 Hb_001034_070 Hb_001034_070 Hb_054885_020--Hb_001034_070 Hb_008143_070 Hb_008143_070 Hb_054885_020--Hb_008143_070 Hb_005260_040 Hb_005260_040 Hb_054885_020--Hb_005260_040 Hb_004040_040 Hb_004040_040 Hb_054885_020--Hb_004040_040 Hb_054885_020--Hb_000537_140 Hb_009476_140 Hb_009476_140 Hb_097347_010--Hb_009476_140 Hb_002876_290 Hb_002876_290 Hb_097347_010--Hb_002876_290 Hb_097347_010--Hb_054586_020 Hb_097347_010--Hb_063480_020 Hb_097347_010--Hb_049160_010 Hb_097347_010--Hb_006588_150 Hb_157846_010 Hb_157846_010 Hb_049160_010--Hb_157846_010 Hb_000497_010 Hb_000497_010 Hb_049160_010--Hb_000497_010 Hb_141918_010 Hb_141918_010 Hb_049160_010--Hb_141918_010 Hb_001907_100 Hb_001907_100 Hb_049160_010--Hb_001907_100 Hb_010727_010 Hb_010727_010 Hb_049160_010--Hb_010727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12417 8.31262 0.535393 4.05377 1.23944 11.9909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16949 0.918804 1.04186 5.126 2.49186

CAGE analysis