Hb_009476_140

Information

Type transcription factor
Description TF Family: bHLH
Location Contig9476: 150417-151666
Sequence    

Annotation

kegg
ID rcu:RCOM_0838610
description hypothetical protein
nr
ID XP_002528314.1
description hypothetical protein RCOM_0838610 [Ricinus communis]
swissprot
ID Q9XEF0
description Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1
trembl
ID B9SQP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0838610 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63308: 150409-151542 , PASA_asmbl_63309: 151558-151699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_140 0.0 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
2 Hb_002876_290 0.1261889734 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
3 Hb_006588_150 0.1741215008 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
4 Hb_001369_440 0.1741494045 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
5 Hb_097347_010 0.1799789342 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
6 Hb_060715_010 0.1955337144 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
7 Hb_003211_010 0.1975415839 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
8 Hb_073395_010 0.2005283531 - - -
9 Hb_000025_340 0.200618173 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
10 Hb_009848_040 0.2006700907 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
11 Hb_000086_100 0.2009579653 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
12 Hb_012760_130 0.201236865 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
13 Hb_003038_220 0.2031083918 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
14 Hb_058381_010 0.2038478572 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
15 Hb_037767_010 0.2086945519 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_006132_100 0.2109471171 - - PREDICTED: uncharacterized protein LOC105642968 [Jatropha curcas]
17 Hb_000416_070 0.2119206996 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
18 Hb_010831_020 0.2121615364 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_005143_040 0.2125500283 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
20 Hb_187739_020 0.2136870735 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_009476_140 Hb_009476_140 Hb_002876_290 Hb_002876_290 Hb_009476_140--Hb_002876_290 Hb_006588_150 Hb_006588_150 Hb_009476_140--Hb_006588_150 Hb_001369_440 Hb_001369_440 Hb_009476_140--Hb_001369_440 Hb_097347_010 Hb_097347_010 Hb_009476_140--Hb_097347_010 Hb_060715_010 Hb_060715_010 Hb_009476_140--Hb_060715_010 Hb_003211_010 Hb_003211_010 Hb_009476_140--Hb_003211_010 Hb_002876_290--Hb_006588_150 Hb_002876_290--Hb_003211_010 Hb_000025_340 Hb_000025_340 Hb_002876_290--Hb_000025_340 Hb_073395_010 Hb_073395_010 Hb_002876_290--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002876_290--Hb_037767_010 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_006588_150--Hb_001369_440 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090 Hb_008177_030 Hb_008177_030 Hb_001369_440--Hb_008177_030 Hb_000441_150 Hb_000441_150 Hb_001369_440--Hb_000441_150 Hb_002667_060 Hb_002667_060 Hb_001369_440--Hb_002667_060 Hb_003747_010 Hb_003747_010 Hb_001369_440--Hb_003747_010 Hb_000640_120 Hb_000640_120 Hb_001369_440--Hb_000640_120 Hb_097347_010--Hb_002876_290 Hb_054586_020 Hb_054586_020 Hb_097347_010--Hb_054586_020 Hb_063480_020 Hb_063480_020 Hb_097347_010--Hb_063480_020 Hb_049160_010 Hb_049160_010 Hb_097347_010--Hb_049160_010 Hb_097347_010--Hb_006588_150 Hb_005143_040 Hb_005143_040 Hb_060715_010--Hb_005143_040 Hb_000416_070 Hb_000416_070 Hb_060715_010--Hb_000416_070 Hb_000003_540 Hb_000003_540 Hb_060715_010--Hb_000003_540 Hb_012760_130 Hb_012760_130 Hb_060715_010--Hb_012760_130 Hb_184570_010 Hb_184570_010 Hb_060715_010--Hb_184570_010 Hb_003994_270 Hb_003994_270 Hb_060715_010--Hb_003994_270 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_011716_090 Hb_011716_090 Hb_003211_010--Hb_011716_090 Hb_008143_070 Hb_008143_070 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2036 18.6155 0.975349 17.6382 8.43785 26.2269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.086 10.7697 1.20246 12.136 0.534338

CAGE analysis