Hb_037767_010

Information

Type -
Description -
Location Contig37767: 1192-1668
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_002533148.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9T4H9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0000910 PE=3 SV=1
Gene Ontology
ID GO:0004674
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037767_010 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_002876_290 0.1584672457 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
3 Hb_002234_190 0.1742279656 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
4 Hb_073395_010 0.1745432662 - - -
5 Hb_000025_340 0.1837908337 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
6 Hb_000426_030 0.1845838792 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
7 Hb_002272_080 0.189865479 - - -
8 Hb_000503_010 0.1979729208 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
9 Hb_009476_140 0.2086945519 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
10 Hb_000123_330 0.2093317397 - - hypothetical protein M569_14136, partial [Genlisea aurea]
11 Hb_002170_040 0.2145224112 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000530_010 0.2152805188 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Jatropha curcas]
13 Hb_001183_010 0.2154141118 - - -
14 Hb_063480_020 0.2155267306 - - unnamed protein product [Vitis vinifera]
15 Hb_000363_370 0.2156933747 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
16 Hb_003211_010 0.2167856987 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
17 Hb_097347_010 0.2197294697 - - PREDICTED: molybdenum cofactor sulfurase-like, partial [Malus domestica]
18 Hb_000406_110 0.2200834956 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
19 Hb_001638_080 0.2204029501 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
20 Hb_001085_040 0.2231017169 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_037767_010 Hb_037767_010 Hb_002876_290 Hb_002876_290 Hb_037767_010--Hb_002876_290 Hb_002234_190 Hb_002234_190 Hb_037767_010--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_037767_010--Hb_073395_010 Hb_000025_340 Hb_000025_340 Hb_037767_010--Hb_000025_340 Hb_000426_030 Hb_000426_030 Hb_037767_010--Hb_000426_030 Hb_002272_080 Hb_002272_080 Hb_037767_010--Hb_002272_080 Hb_006588_150 Hb_006588_150 Hb_002876_290--Hb_006588_150 Hb_009476_140 Hb_009476_140 Hb_002876_290--Hb_009476_140 Hb_003211_010 Hb_003211_010 Hb_002876_290--Hb_003211_010 Hb_002876_290--Hb_000025_340 Hb_002876_290--Hb_073395_010 Hb_002234_190--Hb_073395_010 Hb_006502_050 Hb_006502_050 Hb_002234_190--Hb_006502_050 Hb_081745_010 Hb_081745_010 Hb_002234_190--Hb_081745_010 Hb_002234_190--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_002234_190--Hb_001902_190 Hb_073395_010--Hb_000025_340 Hb_073395_010--Hb_001902_190 Hb_145629_010 Hb_145629_010 Hb_073395_010--Hb_145629_010 Hb_005143_040 Hb_005143_040 Hb_073395_010--Hb_005143_040 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_000025_340--Hb_002272_080 Hb_009838_050 Hb_009838_050 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_001817_160 Hb_001817_160 Hb_000025_340--Hb_001817_160 Hb_000503_010 Hb_000503_010 Hb_000426_030--Hb_000503_010 Hb_002639_100 Hb_002639_100 Hb_000426_030--Hb_002639_100 Hb_062416_010 Hb_062416_010 Hb_000426_030--Hb_062416_010 Hb_001189_110 Hb_001189_110 Hb_000426_030--Hb_001189_110 Hb_000270_350 Hb_000270_350 Hb_000426_030--Hb_000270_350 Hb_000676_040 Hb_000676_040 Hb_000426_030--Hb_000676_040 Hb_002272_080--Hb_001817_160 Hb_001437_080 Hb_001437_080 Hb_002272_080--Hb_001437_080 Hb_004880_140 Hb_004880_140 Hb_002272_080--Hb_004880_140 Hb_005260_020 Hb_005260_020 Hb_002272_080--Hb_005260_020 Hb_010997_080 Hb_010997_080 Hb_002272_080--Hb_010997_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.725416 7.11474 0.547481 3.8716 1.48571 4.7612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12894 4.06624 0.354743 2.60837 0.773693

CAGE analysis