Hb_002272_080

Information

Type -
Description -
Location Contig2272: 49097-49600
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002272_080 0.0 - - -
2 Hb_000025_340 0.1200422854 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
3 Hb_001817_160 0.1239024282 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001437_080 0.135748723 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
5 Hb_004880_140 0.1373221184 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
6 Hb_005260_020 0.1453330233 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
7 Hb_010997_080 0.1478968521 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
8 Hb_002170_040 0.1487424697 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003498_090 0.1488387833 - - hypothetical protein RCOM_0867850 [Ricinus communis]
10 Hb_000218_010 0.1583427341 - - -
11 Hb_000904_080 0.1604593326 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
12 Hb_000175_100 0.1617236542 - - protein kinase, putative [Ricinus communis]
13 Hb_005306_190 0.1622897764 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
14 Hb_118026_010 0.162830761 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
15 Hb_028487_020 0.1641971839 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
16 Hb_000120_330 0.16428626 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004228_030 0.1645921199 - - unnamed protein product [Coffea canephora]
18 Hb_003389_040 0.1652246568 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
19 Hb_000592_090 0.1654707195 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
20 Hb_010727_010 0.1667769142 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_002272_080 Hb_002272_080 Hb_000025_340 Hb_000025_340 Hb_002272_080--Hb_000025_340 Hb_001817_160 Hb_001817_160 Hb_002272_080--Hb_001817_160 Hb_001437_080 Hb_001437_080 Hb_002272_080--Hb_001437_080 Hb_004880_140 Hb_004880_140 Hb_002272_080--Hb_004880_140 Hb_005260_020 Hb_005260_020 Hb_002272_080--Hb_005260_020 Hb_010997_080 Hb_010997_080 Hb_002272_080--Hb_010997_080 Hb_000592_090 Hb_000592_090 Hb_000025_340--Hb_000592_090 Hb_003498_090 Hb_003498_090 Hb_000025_340--Hb_003498_090 Hb_009838_050 Hb_009838_050 Hb_000025_340--Hb_009838_050 Hb_000530_010 Hb_000530_010 Hb_000025_340--Hb_000530_010 Hb_000025_340--Hb_001817_160 Hb_001817_160--Hb_010997_080 Hb_000976_310 Hb_000976_310 Hb_001817_160--Hb_000976_310 Hb_001894_050 Hb_001894_050 Hb_001817_160--Hb_001894_050 Hb_000189_560 Hb_000189_560 Hb_001817_160--Hb_000189_560 Hb_005306_190 Hb_005306_190 Hb_001817_160--Hb_005306_190 Hb_001856_230 Hb_001856_230 Hb_001817_160--Hb_001856_230 Hb_000120_330 Hb_000120_330 Hb_001437_080--Hb_000120_330 Hb_005116_060 Hb_005116_060 Hb_001437_080--Hb_005116_060 Hb_002234_100 Hb_002234_100 Hb_001437_080--Hb_002234_100 Hb_001030_020 Hb_001030_020 Hb_001437_080--Hb_001030_020 Hb_000856_380 Hb_000856_380 Hb_001437_080--Hb_000856_380 Hb_001437_080--Hb_005306_190 Hb_000904_080 Hb_000904_080 Hb_004880_140--Hb_000904_080 Hb_007441_110 Hb_007441_110 Hb_004880_140--Hb_007441_110 Hb_004228_030 Hb_004228_030 Hb_004880_140--Hb_004228_030 Hb_004880_140--Hb_001437_080 Hb_002272_020 Hb_002272_020 Hb_004880_140--Hb_002272_020 Hb_000307_190 Hb_000307_190 Hb_004880_140--Hb_000307_190 Hb_001430_120 Hb_001430_120 Hb_005260_020--Hb_001430_120 Hb_005333_070 Hb_005333_070 Hb_005260_020--Hb_005333_070 Hb_027295_010 Hb_027295_010 Hb_005260_020--Hb_027295_010 Hb_000205_160 Hb_000205_160 Hb_005260_020--Hb_000205_160 Hb_001489_150 Hb_001489_150 Hb_005260_020--Hb_001489_150 Hb_001358_030 Hb_001358_030 Hb_005260_020--Hb_001358_030 Hb_002205_110 Hb_002205_110 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00223 4.94172 1.31273 2.05972 1.33011 4.50629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.2723 5.61886 1.12177 1.63913 0.814477

CAGE analysis