Hb_000904_080

Information

Type -
Description -
Location Contig904: 104159-108525
Sequence    

Annotation

kegg
ID vvi:100245165
description alpha-amylase
nr
ID AHL44839.1
description alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
swissprot
ID P17859
description Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1
trembl
ID W8QKK1
description Alpha-amylase OS=Vitis labrusca x Vitis vinifera GN=AMY PE=2 SV=1
Gene Ontology
ID GO:0004556
description alpha-amylase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61977: 102087-103426 , PASA_asmbl_61978: 104354-106985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000904_080 0.0 - - alpha-amylase-like protein [Vitis labrusca x Vitis vinifera]
2 Hb_004880_140 0.0651369056 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
3 Hb_000307_190 0.1234971326 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Populus euphratica]
4 Hb_007441_110 0.1333372394 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
5 Hb_011512_120 0.1403595965 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
6 Hb_004228_030 0.1425906375 - - unnamed protein product [Coffea canephora]
7 Hb_000130_240 0.1462434486 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_002272_020 0.1518314292 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
9 Hb_001437_080 0.1530486888 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
10 Hb_011512_080 0.154314886 - - hypothetical protein JCGZ_06424 [Jatropha curcas]
11 Hb_003117_020 0.1550379838 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
12 Hb_003299_030 0.1552665003 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
13 Hb_000497_040 0.1555951724 - - BnaC09g09960D [Brassica napus]
14 Hb_000002_240 0.155829065 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
15 Hb_001348_150 0.1559293674 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
16 Hb_005675_040 0.1578255454 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
17 Hb_000256_140 0.1592180289 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
18 Hb_000218_010 0.1601551496 - - -
19 Hb_002272_080 0.1604593326 - - -
20 Hb_000111_180 0.1614300562 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000904_080 Hb_000904_080 Hb_004880_140 Hb_004880_140 Hb_000904_080--Hb_004880_140 Hb_000307_190 Hb_000307_190 Hb_000904_080--Hb_000307_190 Hb_007441_110 Hb_007441_110 Hb_000904_080--Hb_007441_110 Hb_011512_120 Hb_011512_120 Hb_000904_080--Hb_011512_120 Hb_004228_030 Hb_004228_030 Hb_000904_080--Hb_004228_030 Hb_000130_240 Hb_000130_240 Hb_000904_080--Hb_000130_240 Hb_004880_140--Hb_007441_110 Hb_004880_140--Hb_004228_030 Hb_001437_080 Hb_001437_080 Hb_004880_140--Hb_001437_080 Hb_002272_020 Hb_002272_020 Hb_004880_140--Hb_002272_020 Hb_004880_140--Hb_000307_190 Hb_000307_190--Hb_000130_240 Hb_000915_060 Hb_000915_060 Hb_000307_190--Hb_000915_060 Hb_005137_050 Hb_005137_050 Hb_000307_190--Hb_005137_050 Hb_000256_140 Hb_000256_140 Hb_000307_190--Hb_000256_140 Hb_002411_030 Hb_002411_030 Hb_000307_190--Hb_002411_030 Hb_003117_020 Hb_003117_020 Hb_000307_190--Hb_003117_020 Hb_001410_020 Hb_001410_020 Hb_007441_110--Hb_001410_020 Hb_000260_180 Hb_000260_180 Hb_007441_110--Hb_000260_180 Hb_006588_210 Hb_006588_210 Hb_007441_110--Hb_006588_210 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_000087_060 Hb_000087_060 Hb_007441_110--Hb_000087_060 Hb_001828_130 Hb_001828_130 Hb_011512_120--Hb_001828_130 Hb_000175_220 Hb_000175_220 Hb_011512_120--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_011512_120--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_011512_120--Hb_002636_100 Hb_005675_040 Hb_005675_040 Hb_011512_120--Hb_005675_040 Hb_011512_120--Hb_000256_140 Hb_003581_070 Hb_003581_070 Hb_004228_030--Hb_003581_070 Hb_004228_030--Hb_005675_040 Hb_000373_150 Hb_000373_150 Hb_004228_030--Hb_000373_150 Hb_000125_170 Hb_000125_170 Hb_004228_030--Hb_000125_170 Hb_004228_030--Hb_000130_240 Hb_005207_050 Hb_005207_050 Hb_004228_030--Hb_005207_050 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_001247_130 Hb_001247_130 Hb_000130_240--Hb_001247_130 Hb_000130_240--Hb_005137_050 Hb_000130_240--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_000130_240--Hb_032208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9171 4.15294 2.14686 0.768042 1.67755 2.57167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.801147 3.59775 0.787618 1.45824 0.602823

CAGE analysis