Hb_011512_120

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig11512: 60981-64078
Sequence    

Annotation

kegg
ID rcu:RCOM_1023150
description GATA transcription factor, putative
nr
ID XP_012092669.1
description PREDICTED: GATA transcription factor 1 [Jatropha curcas]
swissprot
ID Q8LAU9
description GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2
trembl
ID A0A067JC77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06429 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04572: 61134-64036 , PASA_asmbl_04573: 61332-61847
cDNA
(Sanger)
(ID:Location)		 047_P02.ab1: 61137-62572

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011512_120 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
2 Hb_001828_130 0.1049642725 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
3 Hb_000175_220 0.1055872858 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
4 Hb_000322_150 0.1161617611 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
5 Hb_002636_100 0.1197381452 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
6 Hb_005675_040 0.1201859234 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
7 Hb_000256_140 0.1238462374 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
8 Hb_000832_030 0.1240601746 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
9 Hb_000479_320 0.1270990376 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06140, mitochondrial-like [Jatropha curcas]
10 Hb_004371_010 0.1273056439 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
11 Hb_001123_290 0.1282628435 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
12 Hb_008775_040 0.1286151987 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
13 Hb_010381_030 0.1304002077 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
14 Hb_004440_040 0.1307721379 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_005725_210 0.132580623 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
16 Hb_076693_020 0.132754751 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
17 Hb_116086_010 0.1330099669 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
18 Hb_002263_040 0.1344530648 - - carbon catabolite repressor protein, putative [Ricinus communis]
19 Hb_000442_010 0.1361316943 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
20 Hb_002097_200 0.1361345993 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_011512_120 Hb_011512_120 Hb_001828_130 Hb_001828_130 Hb_011512_120--Hb_001828_130 Hb_000175_220 Hb_000175_220 Hb_011512_120--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_011512_120--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_011512_120--Hb_002636_100 Hb_005675_040 Hb_005675_040 Hb_011512_120--Hb_005675_040 Hb_000256_140 Hb_000256_140 Hb_011512_120--Hb_000256_140 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_001828_130--Hb_000322_150 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_008775_040 Hb_008775_040 Hb_000175_220--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_000175_220--Hb_000264_320 Hb_004767_050 Hb_004767_050 Hb_000175_220--Hb_004767_050 Hb_000175_220--Hb_002636_100 Hb_001123_290 Hb_001123_290 Hb_000175_220--Hb_001123_290 Hb_000175_220--Hb_001828_130 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_000322_150--Hb_011491_010 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_002636_100--Hb_008775_040 Hb_002636_100--Hb_000264_320 Hb_002636_100--Hb_002798_070 Hb_000796_180 Hb_000796_180 Hb_002636_100--Hb_000796_180 Hb_003052_140 Hb_003052_140 Hb_005675_040--Hb_003052_140 Hb_000125_170 Hb_000125_170 Hb_005675_040--Hb_000125_170 Hb_140506_010 Hb_140506_010 Hb_005675_040--Hb_140506_010 Hb_002411_030 Hb_002411_030 Hb_005675_040--Hb_002411_030 Hb_005541_010 Hb_005541_010 Hb_005675_040--Hb_005541_010 Hb_005675_040--Hb_004767_050 Hb_005288_010 Hb_005288_010 Hb_000256_140--Hb_005288_010 Hb_000256_140--Hb_000322_150 Hb_000256_140--Hb_002411_030 Hb_004440_040 Hb_004440_040 Hb_000256_140--Hb_004440_040 Hb_000307_190 Hb_000307_190 Hb_000256_140--Hb_000307_190 Hb_000256_140--Hb_002636_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8279 54.2875 13.2593 8.09111 13.0443 23.8095
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.42143 28.3723 18.4313 14.4563 12.1991

CAGE analysis