Hb_001123_290

Information

Type -
Description -
Location Contig1123: 271436-277710
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16280g
description POPTRDRAFT_646986; hypothetical protein
nr
ID XP_012088736.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
swissprot
ID Q8LL04
description RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2
trembl
ID A0A067JH84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23109 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rna polymerase ii c-terminal domain phosphatase-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03761: 274946-275351 , PASA_asmbl_03762: 274924-275489 , PASA_asmbl_03763: 277026-277621 , PASA_asmbl_03764: 277640-277876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_290 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
2 Hb_116086_010 0.0791996301 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
3 Hb_000175_220 0.0910485705 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
4 Hb_000322_150 0.0959886076 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
5 Hb_000832_030 0.0984539597 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
6 Hb_001864_060 0.0990047287 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_002005_110 0.0990087955 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
8 Hb_093084_070 0.0997054652 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_000140_070 0.0999395298 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
10 Hb_001828_130 0.1009516348 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_012807_050 0.1021459431 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
12 Hb_002046_020 0.1024586187 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
13 Hb_003752_100 0.1030343237 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
14 Hb_048219_010 0.1042551779 - - coronatine-insensitive 1 [Hevea brasiliensis]
15 Hb_000941_130 0.1068542758 - - gamma-tubulin complex component, putative [Ricinus communis]
16 Hb_008775_040 0.1070841697 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
17 Hb_004767_050 0.1074130531 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
18 Hb_042038_020 0.107640303 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
19 Hb_076693_020 0.1077223387 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
20 Hb_004109_030 0.1088447115 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001123_290 Hb_001123_290 Hb_116086_010 Hb_116086_010 Hb_001123_290--Hb_116086_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_000832_030 Hb_000832_030 Hb_001123_290--Hb_000832_030 Hb_001864_060 Hb_001864_060 Hb_001123_290--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_001123_290--Hb_002005_110 Hb_116086_010--Hb_000832_030 Hb_116086_010--Hb_001864_060 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_008775_040 Hb_008775_040 Hb_000175_220--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_000175_220--Hb_000264_320 Hb_004767_050 Hb_004767_050 Hb_000175_220--Hb_004767_050 Hb_002636_100 Hb_002636_100 Hb_000175_220--Hb_002636_100 Hb_001828_130 Hb_001828_130 Hb_000175_220--Hb_001828_130 Hb_076693_020 Hb_076693_020 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_000322_150--Hb_001828_130 Hb_000832_030--Hb_003411_110 Hb_000334_220 Hb_000334_220 Hb_000832_030--Hb_000334_220 Hb_003373_040 Hb_003373_040 Hb_000832_030--Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_000832_030--Hb_093084_070 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_003768_050 Hb_003768_050 Hb_002005_110--Hb_003768_050 Hb_013399_070 Hb_013399_070 Hb_002005_110--Hb_013399_070 Hb_002005_110--Hb_001864_060 Hb_001080_230 Hb_001080_230 Hb_002005_110--Hb_001080_230 Hb_002005_110--Hb_001828_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78436 10.2656 1.61107 2.74173 2.83462 5.64327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.89552 2.98424 4.68417 3.87292 2.28798

CAGE analysis