Hb_000832_030

Information

Type transcription factor
Description TF Family: mTERF
Location Contig832: 20908-22104
Sequence    

Annotation

kegg
ID vvi:100266863
description uncharacterized LOC100266863
nr
ID XP_012073261.1
description PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZ73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59828: 20599-22289
cDNA
(Sanger)
(ID:Location)		 017_L12.ab1: 21494-22289 , 023_L03.ab1: 21574-22289

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_030 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
2 Hb_003411_110 0.0772518084 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
3 Hb_116086_010 0.0798868749 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
4 Hb_000334_220 0.0880265767 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
5 Hb_003373_040 0.0929614769 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
6 Hb_093084_070 0.0962190009 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
7 Hb_001123_290 0.0984539597 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
8 Hb_004440_040 0.0999644736 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_155396_010 0.1014480404 - - TMV resistance protein N, putative [Ricinus communis]
10 Hb_001864_060 0.1027664708 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_000322_150 0.104599378 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
12 Hb_000061_490 0.1083340982 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
13 Hb_012564_030 0.1085237607 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_005675_040 0.1089556122 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
15 Hb_001828_130 0.1096644127 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
16 Hb_002043_140 0.1109080878 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
17 Hb_010381_030 0.1111709831 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
18 Hb_004109_030 0.1112383947 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000336_250 0.1123661126 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
20 Hb_001766_020 0.1124050158 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]

Gene co-expression network

sample Hb_000832_030 Hb_000832_030 Hb_003411_110 Hb_003411_110 Hb_000832_030--Hb_003411_110 Hb_116086_010 Hb_116086_010 Hb_000832_030--Hb_116086_010 Hb_000334_220 Hb_000334_220 Hb_000832_030--Hb_000334_220 Hb_003373_040 Hb_003373_040 Hb_000832_030--Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_000832_030--Hb_093084_070 Hb_001123_290 Hb_001123_290 Hb_000832_030--Hb_001123_290 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_003411_110--Hb_000334_220 Hb_000084_030 Hb_000084_030 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_116086_010--Hb_001123_290 Hb_001864_060 Hb_001864_060 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_155396_010 Hb_155396_010 Hb_116086_010--Hb_155396_010 Hb_005016_160 Hb_005016_160 Hb_000334_220--Hb_005016_160 Hb_005541_010 Hb_005541_010 Hb_000334_220--Hb_005541_010 Hb_003052_140 Hb_003052_140 Hb_000334_220--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_000334_220--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_000334_220--Hb_000336_250 Hb_000479_220 Hb_000479_220 Hb_000334_220--Hb_000479_220 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_093084_070--Hb_000236_220 Hb_000236_410 Hb_000236_410 Hb_093084_070--Hb_000236_410 Hb_001055_030 Hb_001055_030 Hb_093084_070--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_093084_070--Hb_000061_490 Hb_074969_010 Hb_074969_010 Hb_093084_070--Hb_074969_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_001123_290--Hb_001864_060 Hb_001123_290--Hb_002005_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3099 14.6553 3.89263 5.21278 4.35548 6.53964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45883 5.56957 6.13239 4.29573 3.51046

CAGE analysis