Hb_002284_280

Information

Type transcription factor
Description TF Family: HMG
Location Contig2284: 218437-220812
Sequence    

Annotation

kegg
ID eus:EUTSA_v10009970mg
description hypothetical protein
nr
ID ADM47612.1
description high mobility group protein [Hevea brasiliensis]
swissprot
ID O49596
description High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2 PE=1 SV=1
trembl
ID I6LLZ8
description High mobility group protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0000785
description high mobility group beta isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23832: 218825-220544 , PASA_asmbl_23833: 218825-220497 , PASA_asmbl_23834: 218825-220514 , PASA_asmbl_23835: 218825-220534 , PASA_asmbl_23836: 219888-220086 , PASA_asmbl_23838: 221366-222067
cDNA
(Sanger)
(ID:Location)		 002_I24.ab1: 218845-220544 , 007_P13.ab1: 218847-220544 , 016_H08.ab1: 218922-220544 , 024_L02.ab1: 218946-220535 , 025_K09.ab1: 218825-220473 , 026_N12.ab1: 218836-220540 , 029_C18.ab1: 218959-220544 , 042_L12.ab1: 218826-220535 , 045_B10.ab1: 218828-220544 , 048_G17.ab1: 218825-219081 , 048_N19.ab1: 218826-220544 , 049_I07.ab1: 218918-220544 , 050_D07.ab1: 218902-220544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_280 0.0 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
2 Hb_134951_010 0.0997233062 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_005675_040 0.1040449907 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
4 Hb_003052_140 0.1043765168 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
5 Hb_010738_010 0.1066084158 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_000796_180 0.1067896481 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
7 Hb_003609_030 0.1077262664 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
8 Hb_003411_110 0.107961404 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
9 Hb_000336_250 0.1082316226 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
10 Hb_001728_050 0.1103895012 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
11 Hb_000084_030 0.1105800507 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002671_140 0.1106407399 - - calcium-dependent protein kinase [Hevea brasiliensis]
13 Hb_001946_040 0.110969675 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002411_030 0.1128962527 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
15 Hb_005016_160 0.1137082526 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
16 Hb_000334_220 0.1140160019 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
17 Hb_000707_060 0.1160975634 - - -
18 Hb_000201_100 0.1162930679 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
19 Hb_031527_020 0.1176183803 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
20 Hb_189147_010 0.1183785845 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002284_280 Hb_002284_280 Hb_134951_010 Hb_134951_010 Hb_002284_280--Hb_134951_010 Hb_005675_040 Hb_005675_040 Hb_002284_280--Hb_005675_040 Hb_003052_140 Hb_003052_140 Hb_002284_280--Hb_003052_140 Hb_010738_010 Hb_010738_010 Hb_002284_280--Hb_010738_010 Hb_000796_180 Hb_000796_180 Hb_002284_280--Hb_000796_180 Hb_003609_030 Hb_003609_030 Hb_002284_280--Hb_003609_030 Hb_001486_080 Hb_001486_080 Hb_134951_010--Hb_001486_080 Hb_001828_200 Hb_001828_200 Hb_134951_010--Hb_001828_200 Hb_001898_230 Hb_001898_230 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140 Hb_005675_040--Hb_003052_140 Hb_000125_170 Hb_000125_170 Hb_005675_040--Hb_000125_170 Hb_140506_010 Hb_140506_010 Hb_005675_040--Hb_140506_010 Hb_002411_030 Hb_002411_030 Hb_005675_040--Hb_002411_030 Hb_005541_010 Hb_005541_010 Hb_005675_040--Hb_005541_010 Hb_004767_050 Hb_004767_050 Hb_005675_040--Hb_004767_050 Hb_000336_250 Hb_000336_250 Hb_003052_140--Hb_000336_250 Hb_003052_140--Hb_000125_170 Hb_005016_160 Hb_005016_160 Hb_003052_140--Hb_005016_160 Hb_007416_180 Hb_007416_180 Hb_003052_140--Hb_007416_180 Hb_003052_140--Hb_005541_010 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130 Hb_000174_220 Hb_000174_220 Hb_000796_180--Hb_000174_220 Hb_000796_180--Hb_000103_100 Hb_002636_100 Hb_002636_100 Hb_000796_180--Hb_002636_100 Hb_000139_090 Hb_000139_090 Hb_000796_180--Hb_000139_090 Hb_000092_020 Hb_000092_020 Hb_000796_180--Hb_000092_020 Hb_000796_180--Hb_000169_130 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1835.99 1522.71 907.847 457.848 845.719 1219.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
702.512 1003.52 1013.5 286.496 629.461

CAGE analysis