Hb_000270_350

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig270: 261151-263076
Sequence    

Annotation

kegg
ID rcu:RCOM_1512870
description DNA binding protein, putative
nr
ID XP_012080161.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KH70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11545 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28193: 261080-263198 , PASA_asmbl_28194: 261080-263191 , PASA_asmbl_28195: 261080-262205 , PASA_asmbl_28196: 262251-263191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_350 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_002524_020 0.1470388183 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
3 Hb_002781_010 0.1485331683 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_062416_010 0.1545532795 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
5 Hb_001268_310 0.1561282839 - - -
6 Hb_001675_010 0.1569473764 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
7 Hb_003544_070 0.1632455409 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000631_120 0.1653793927 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
9 Hb_002477_120 0.1656923182 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
10 Hb_008667_060 0.1701213859 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
11 Hb_000426_030 0.1736492487 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
12 Hb_004310_040 0.1739295829 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001699_150 0.1775703784 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
14 Hb_125126_010 0.1780717696 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
15 Hb_127599_010 0.1781371199 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
16 Hb_162150_010 0.1784692748 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005147_040 0.1789102081 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
18 Hb_000802_190 0.1797730458 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
19 Hb_000676_040 0.1803973841 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
20 Hb_077048_010 0.1819373633 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000270_350 Hb_000270_350 Hb_002524_020 Hb_002524_020 Hb_000270_350--Hb_002524_020 Hb_002781_010 Hb_002781_010 Hb_000270_350--Hb_002781_010 Hb_062416_010 Hb_062416_010 Hb_000270_350--Hb_062416_010 Hb_001268_310 Hb_001268_310 Hb_000270_350--Hb_001268_310 Hb_001675_010 Hb_001675_010 Hb_000270_350--Hb_001675_010 Hb_003544_070 Hb_003544_070 Hb_000270_350--Hb_003544_070 Hb_000371_060 Hb_000371_060 Hb_002524_020--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_002524_020--Hb_000676_040 Hb_002524_020--Hb_062416_010 Hb_001414_040 Hb_001414_040 Hb_002524_020--Hb_001414_040 Hb_002524_020--Hb_001268_310 Hb_007765_030 Hb_007765_030 Hb_002524_020--Hb_007765_030 Hb_002781_010--Hb_001675_010 Hb_001122_010 Hb_001122_010 Hb_002781_010--Hb_001122_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_001625_010 Hb_001625_010 Hb_002781_010--Hb_001625_010 Hb_010270_010 Hb_010270_010 Hb_002781_010--Hb_010270_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_000631_120 Hb_000631_120 Hb_062416_010--Hb_000631_120 Hb_000059_020 Hb_000059_020 Hb_062416_010--Hb_000059_020 Hb_008948_140 Hb_008948_140 Hb_062416_010--Hb_008948_140 Hb_062416_010--Hb_007765_030 Hb_001259_120 Hb_001259_120 Hb_062416_010--Hb_001259_120 Hb_001862_110 Hb_001862_110 Hb_001268_310--Hb_001862_110 Hb_000926_150 Hb_000926_150 Hb_001268_310--Hb_000926_150 Hb_001257_100 Hb_001257_100 Hb_001268_310--Hb_001257_100 Hb_001268_310--Hb_000631_120 Hb_001268_310--Hb_000676_040 Hb_001699_150 Hb_001699_150 Hb_001675_010--Hb_001699_150 Hb_001675_010--Hb_002524_020 Hb_001799_190 Hb_001799_190 Hb_001675_010--Hb_001799_190 Hb_001675_010--Hb_000371_060 Hb_001675_010--Hb_003544_070 Hb_003544_070--Hb_001699_150 Hb_003544_070--Hb_000676_040 Hb_003544_070--Hb_002524_020 Hb_003544_070--Hb_001799_190 Hb_008667_060 Hb_008667_060 Hb_003544_070--Hb_008667_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7558 44.5889 10.0382 14.1665 2.75061 10.1186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86728 12.2016 3.38673 22.6728 6.62692

CAGE analysis