Hb_001625_010

Information

Type -
Description -
Location Contig1625: 6457-8131
Sequence    

Annotation

kegg
ID rcu:RCOM_1682350
description glycerate dehydrogenase, putative (EC:1.1.1.26)
nr
ID XP_012087044.1
description PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
swissprot
ID Q9LE33
description Glyoxylate/hydroxypyruvate reductase HPR3 OS=Arabidopsis thaliana GN=HPR3 PE=2 SV=1
trembl
ID A0A067JNI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20702 PE=3 SV=1
Gene Ontology
ID GO:0047964
description glyoxylate hydroxypyruvate reductase hpr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14749: 6546-7842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001625_010 0.0 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
2 Hb_000083_130 0.1353498386 - - hypothetical protein RCOM_0884570 [Ricinus communis]
3 Hb_002781_010 0.1380862671 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
4 Hb_001799_190 0.1444456585 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
5 Hb_169051_010 0.1457338731 - - JHL06B08.1 [Jatropha curcas]
6 Hb_000216_020 0.1457536585 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
7 Hb_003398_070 0.1527611911 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
8 Hb_003506_020 0.1571352298 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
9 Hb_146510_010 0.1587440245 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
10 Hb_111985_040 0.1591672826 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
11 Hb_159411_010 0.1604338566 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_004410_150 0.1605865352 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
13 Hb_057079_020 0.1611158079 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002524_030 0.1614534978 - - -
15 Hb_003544_070 0.1634037702 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010253_020 0.1634705205 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_000362_110 0.165097693 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
18 Hb_002805_300 0.1657581488 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Jatropha curcas]
19 Hb_000778_020 0.1659062256 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
20 Hb_010270_010 0.1669054513 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001625_010 Hb_001625_010 Hb_000083_130 Hb_000083_130 Hb_001625_010--Hb_000083_130 Hb_002781_010 Hb_002781_010 Hb_001625_010--Hb_002781_010 Hb_001799_190 Hb_001799_190 Hb_001625_010--Hb_001799_190 Hb_169051_010 Hb_169051_010 Hb_001625_010--Hb_169051_010 Hb_000216_020 Hb_000216_020 Hb_001625_010--Hb_000216_020 Hb_003398_070 Hb_003398_070 Hb_001625_010--Hb_003398_070 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001900_060 Hb_001900_060 Hb_000083_130--Hb_001900_060 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_001675_010 Hb_001675_010 Hb_002781_010--Hb_001675_010 Hb_001122_010 Hb_001122_010 Hb_002781_010--Hb_001122_010 Hb_004586_240 Hb_004586_240 Hb_002781_010--Hb_004586_240 Hb_010270_010 Hb_010270_010 Hb_002781_010--Hb_010270_010 Hb_000840_070 Hb_000840_070 Hb_002781_010--Hb_000840_070 Hb_001699_150 Hb_001699_150 Hb_001799_190--Hb_001699_150 Hb_001414_040 Hb_001414_040 Hb_001799_190--Hb_001414_040 Hb_001799_190--Hb_001675_010 Hb_000395_220 Hb_000395_220 Hb_001799_190--Hb_000395_220 Hb_001322_180 Hb_001322_180 Hb_001799_190--Hb_001322_180 Hb_002524_020 Hb_002524_020 Hb_001799_190--Hb_002524_020 Hb_003125_180 Hb_003125_180 Hb_169051_010--Hb_003125_180 Hb_011032_010 Hb_011032_010 Hb_169051_010--Hb_011032_010 Hb_000684_360 Hb_000684_360 Hb_169051_010--Hb_000684_360 Hb_146510_010 Hb_146510_010 Hb_169051_010--Hb_146510_010 Hb_169051_010--Hb_001322_180 Hb_053575_020 Hb_053575_020 Hb_169051_010--Hb_053575_020 Hb_000059_130 Hb_000059_130 Hb_000216_020--Hb_000059_130 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_008667_060 Hb_008667_060 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_003398_070--Hb_002005_120 Hb_002233_020 Hb_002233_020 Hb_003398_070--Hb_002233_020 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.79075 9.13305 1.24036 5.29462 0.852442 2.62373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.771426 0.796355 0.55984 8.10535 2.95626

CAGE analysis