Hb_000083_130

Information

Type -
Description -
Location Contig83: 217170-220614
Sequence    

Annotation

kegg
ID rcu:RCOM_0884570
description hypothetical protein
nr
ID XP_002522618.1
description hypothetical protein RCOM_0884570 [Ricinus communis]
swissprot
ID Q9FMF5
description Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2
trembl
ID B9S9E9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0884570 PE=4 SV=1
Gene Ontology
ID GO:0000271
description root phototropism protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59780: 217159-219987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_130 0.0 - - hypothetical protein RCOM_0884570 [Ricinus communis]
2 Hb_010253_020 0.1320902786 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_001625_010 0.1353498386 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
4 Hb_001900_060 0.1392264696 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
5 Hb_159411_010 0.1497247502 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_000778_020 0.1649842997 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
7 Hb_000413_230 0.1658441674 - - thioredoxin h [Hevea brasiliensis]
8 Hb_010270_010 0.1729227026 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_010605_010 0.1730356446 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
10 Hb_000189_120 0.1733490274 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
11 Hb_002928_120 0.1772891162 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
12 Hb_000152_460 0.178071903 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
13 Hb_001832_210 0.1790681185 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
14 Hb_000362_110 0.1792836586 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
15 Hb_001351_040 0.1801147188 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
16 Hb_000197_230 0.1810810924 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_001369_160 0.1816235638 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
18 Hb_146510_010 0.1820171526 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
19 Hb_000977_010 0.1832026501 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
20 Hb_004316_030 0.1876664756 - - hypothetical protein JCGZ_23475 [Jatropha curcas]

Gene co-expression network

sample Hb_000083_130 Hb_000083_130 Hb_010253_020 Hb_010253_020 Hb_000083_130--Hb_010253_020 Hb_001625_010 Hb_001625_010 Hb_000083_130--Hb_001625_010 Hb_001900_060 Hb_001900_060 Hb_000083_130--Hb_001900_060 Hb_159411_010 Hb_159411_010 Hb_000083_130--Hb_159411_010 Hb_000778_020 Hb_000778_020 Hb_000083_130--Hb_000778_020 Hb_000413_230 Hb_000413_230 Hb_000083_130--Hb_000413_230 Hb_010253_020--Hb_000778_020 Hb_000189_120 Hb_000189_120 Hb_010253_020--Hb_000189_120 Hb_057079_020 Hb_057079_020 Hb_010253_020--Hb_057079_020 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_002928_120 Hb_002928_120 Hb_010253_020--Hb_002928_120 Hb_002781_010 Hb_002781_010 Hb_001625_010--Hb_002781_010 Hb_001799_190 Hb_001799_190 Hb_001625_010--Hb_001799_190 Hb_169051_010 Hb_169051_010 Hb_001625_010--Hb_169051_010 Hb_000216_020 Hb_000216_020 Hb_001625_010--Hb_000216_020 Hb_003398_070 Hb_003398_070 Hb_001625_010--Hb_003398_070 Hb_000702_060 Hb_000702_060 Hb_001900_060--Hb_000702_060 Hb_000684_360 Hb_000684_360 Hb_001900_060--Hb_000684_360 Hb_001900_060--Hb_169051_010 Hb_000362_110 Hb_000362_110 Hb_001900_060--Hb_000362_110 Hb_000793_040 Hb_000793_040 Hb_001900_060--Hb_000793_040 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_005880_010 Hb_005880_010 Hb_159411_010--Hb_005880_010 Hb_001369_160 Hb_001369_160 Hb_159411_010--Hb_001369_160 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000778_020--Hb_000189_120 Hb_003972_040 Hb_003972_040 Hb_000413_230--Hb_003972_040 Hb_000152_460 Hb_000152_460 Hb_000413_230--Hb_000152_460 Hb_034337_010 Hb_034337_010 Hb_000413_230--Hb_034337_010 Hb_000413_230--Hb_001900_060 Hb_000413_230--Hb_002928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.39279 6.3971 0.991849 5.33944 0.836942 1.67863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207163 0.108677 0.129543 8.42489 1.70448

CAGE analysis