Hb_003972_040

Information

Type transcription factor
Description TF Family: SBP
Location Contig3972: 68640-72137
Sequence    

Annotation

kegg
ID rcu:RCOM_1620060
description LIGULELESS1 protein, putative
nr
ID XP_012067818.1
description PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
swissprot
ID Q94JW8
description Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2
trembl
ID A0A067KYV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15739 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39619: 67763-68195 , PASA_asmbl_39620: 68352-72337 , PASA_asmbl_39621: 69540-69921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003972_040 0.0 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
2 Hb_034280_010 0.1447391734 - - Protein bem46, putative [Ricinus communis]
3 Hb_028115_010 0.1456296096 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000413_230 0.1765154504 - - thioredoxin h [Hevea brasiliensis]
5 Hb_010872_040 0.2064420425 - - hypothetical protein F775_31993 [Aegilops tauschii]
6 Hb_173741_010 0.2079951216 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
7 Hb_000679_200 0.210972578 - - EIN3-binding F box protein 1 [Theobroma cacao]
8 Hb_032208_050 0.2171283698 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
9 Hb_018691_010 0.2182221027 - - -
10 Hb_000130_060 0.2196779692 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_001900_060 0.2201581872 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
12 Hb_000818_080 0.223920633 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
13 Hb_000152_460 0.2246360088 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
14 Hb_060391_010 0.22553814 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_003050_100 0.2259927781 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
16 Hb_004724_120 0.2292898568 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
17 Hb_000029_440 0.2306809577 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
18 Hb_001124_110 0.2307608411 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
19 Hb_029510_100 0.231908594 - - scab resistance family protein [Populus trichocarpa]
20 Hb_000000_110 0.2364699925 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003972_040 Hb_003972_040 Hb_034280_010 Hb_034280_010 Hb_003972_040--Hb_034280_010 Hb_028115_010 Hb_028115_010 Hb_003972_040--Hb_028115_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_028115_010--Hb_010872_040 Hb_005970_010 Hb_005970_010 Hb_028115_010--Hb_005970_010 Hb_000000_120 Hb_000000_120 Hb_028115_010--Hb_000000_120 Hb_001014_190 Hb_001014_190 Hb_028115_010--Hb_001014_190 Hb_000818_080 Hb_000818_080 Hb_028115_010--Hb_000818_080 Hb_000083_130 Hb_000083_130 Hb_000413_230--Hb_000083_130 Hb_000152_460 Hb_000152_460 Hb_000413_230--Hb_000152_460 Hb_034337_010 Hb_034337_010 Hb_000413_230--Hb_034337_010 Hb_001900_060 Hb_001900_060 Hb_000413_230--Hb_001900_060 Hb_002928_120 Hb_002928_120 Hb_000413_230--Hb_002928_120 Hb_003227_010 Hb_003227_010 Hb_010872_040--Hb_003227_010 Hb_000235_050 Hb_000235_050 Hb_010872_040--Hb_000235_050 Hb_010872_040--Hb_005970_010 Hb_010872_040--Hb_001014_190 Hb_000139_140 Hb_000139_140 Hb_010872_040--Hb_000139_140 Hb_001369_140 Hb_001369_140 Hb_173741_010--Hb_001369_140 Hb_000589_210 Hb_000589_210 Hb_173741_010--Hb_000589_210 Hb_000080_080 Hb_000080_080 Hb_173741_010--Hb_000080_080 Hb_173741_010--Hb_034280_010 Hb_000011_380 Hb_000011_380 Hb_173741_010--Hb_000011_380 Hb_060391_010 Hb_060391_010 Hb_000679_200--Hb_060391_010 Hb_000098_300 Hb_000098_300 Hb_000679_200--Hb_000098_300 Hb_026337_010 Hb_026337_010 Hb_000679_200--Hb_026337_010 Hb_007333_040 Hb_007333_040 Hb_000679_200--Hb_007333_040 Hb_004724_120 Hb_004724_120 Hb_000679_200--Hb_004724_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21965 2.73782 1.01742 10.6655 0.921135 3.31963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440166 0.557969 0.218471 9.16153 0.770864

CAGE analysis