Hb_007333_040

Information

Type -
Description -
Location Contig7333: 15509-17640
Sequence    

Annotation

kegg
ID gmx:100778189
description proline-rich receptor-like protein kinase PERK1-like
nr
ID XP_006582995.1
description PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
swissprot
ID P0DL10
description Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays GN=TD1 PE=2 SV=1
trembl
ID I1KG62
description Uncharacterized protein (Fragment) OS=Glycine max PE=3 SV=2
Gene Ontology
ID GO:0000166
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007333_040 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
2 Hb_033385_010 0.0863804952 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
3 Hb_106415_010 0.1303286237 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
4 Hb_009119_020 0.1331629974 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
5 Hb_054586_020 0.1447907527 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_181328_010 0.1516173374 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_019053_010 0.1585889303 - - -
8 Hb_003633_040 0.1625361597 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
9 Hb_051437_010 0.1650950471 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
10 Hb_081517_010 0.1664118571 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
11 Hb_013358_090 0.166563444 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
12 Hb_099878_050 0.1716213679 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
13 Hb_068014_010 0.1725239416 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
14 Hb_013358_080 0.1764911853 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
15 Hb_115477_010 0.1776853077 - - Protein dom-3, putative [Ricinus communis]
16 Hb_077573_010 0.1839478121 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_009119_040 0.1840778737 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
18 Hb_001195_160 0.1845884013 - - -
19 Hb_002611_020 0.1846398176 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
20 Hb_165402_010 0.1875713292 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007333_040 Hb_007333_040 Hb_033385_010 Hb_033385_010 Hb_007333_040--Hb_033385_010 Hb_106415_010 Hb_106415_010 Hb_007333_040--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_007333_040--Hb_009119_020 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_019053_010 Hb_019053_010 Hb_007333_040--Hb_019053_010 Hb_033385_010--Hb_106415_010 Hb_068014_010 Hb_068014_010 Hb_033385_010--Hb_068014_010 Hb_033385_010--Hb_009119_020 Hb_099878_050 Hb_099878_050 Hb_033385_010--Hb_099878_050 Hb_013358_090 Hb_013358_090 Hb_033385_010--Hb_013358_090 Hb_106415_010--Hb_099878_050 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_106415_010--Hb_019053_010 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_009119_020--Hb_019053_010 Hb_115477_010 Hb_115477_010 Hb_009119_020--Hb_115477_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_001386_140 Hb_001386_140 Hb_054586_020--Hb_001386_140 Hb_006132_100 Hb_006132_100 Hb_054586_020--Hb_006132_100 Hb_010565_010 Hb_010565_010 Hb_054586_020--Hb_010565_010 Hb_058702_010 Hb_058702_010 Hb_054586_020--Hb_058702_010 Hb_030328_010 Hb_030328_010 Hb_054586_020--Hb_030328_010 Hb_002611_020 Hb_002611_020 Hb_181328_010--Hb_002611_020 Hb_181328_010--Hb_013358_090 Hb_002400_330 Hb_002400_330 Hb_181328_010--Hb_002400_330 Hb_181328_010--Hb_106415_010 Hb_086765_010 Hb_086765_010 Hb_181328_010--Hb_086765_010 Hb_050912_010 Hb_050912_010 Hb_181328_010--Hb_050912_010 Hb_019053_010--Hb_068014_010 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32708 5.70828 1.96382 19.2613 5.34113 28.2503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18326 2.46554 2.53717 11.1515 3.1992

CAGE analysis