Hb_115477_010

Information

Type -
Description -
Location Contig115477: 548-938
Sequence    

Annotation

kegg
ID rcu:RCOM_1243340
description Protein dom-3, putative
nr
ID XP_002516686.1
description Protein dom-3, putative [Ricinus communis]
swissprot
ID Q8RY73
description Decapping nuclease DXO homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1
trembl
ID B9RSG7
description Protein dom-3, putative OS=Ricinus communis GN=RCOM_1243340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04672: 909-1273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115477_010 0.0 - - Protein dom-3, putative [Ricinus communis]
2 Hb_115107_010 0.1055109689 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
3 Hb_168973_010 0.1163672439 - - -
4 Hb_006663_090 0.1181913241 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
5 Hb_007026_040 0.1194688443 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
6 Hb_001386_140 0.1231208878 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_010565_010 0.1291722548 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
8 Hb_000696_350 0.1413556455 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
9 Hb_003633_040 0.1432608101 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
10 Hb_019053_010 0.1443285789 - - -
11 Hb_009119_020 0.1444870223 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
12 Hb_000825_030 0.1462696245 - - zinc binding dehydrogenase, putative [Ricinus communis]
13 Hb_006663_070 0.1471160788 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
14 Hb_028912_040 0.1507320483 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
15 Hb_054586_020 0.1521230855 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
16 Hb_009529_040 0.1531830584 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
17 Hb_001840_070 0.1543692022 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000679_150 0.1546232366 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
19 Hb_004732_020 0.1557563769 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
20 Hb_076875_020 0.1576503143 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]

Gene co-expression network

sample Hb_115477_010 Hb_115477_010 Hb_115107_010 Hb_115107_010 Hb_115477_010--Hb_115107_010 Hb_168973_010 Hb_168973_010 Hb_115477_010--Hb_168973_010 Hb_006663_090 Hb_006663_090 Hb_115477_010--Hb_006663_090 Hb_007026_040 Hb_007026_040 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_010565_010 Hb_010565_010 Hb_115477_010--Hb_010565_010 Hb_002110_040 Hb_002110_040 Hb_115107_010--Hb_002110_040 Hb_009529_040 Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115107_010--Hb_007026_040 Hb_001135_140 Hb_001135_140 Hb_115107_010--Hb_001135_140 Hb_115107_010--Hb_168973_010 Hb_008096_030 Hb_008096_030 Hb_168973_010--Hb_008096_030 Hb_005023_030 Hb_005023_030 Hb_168973_010--Hb_005023_030 Hb_007763_060 Hb_007763_060 Hb_168973_010--Hb_007763_060 Hb_000074_060 Hb_000074_060 Hb_168973_010--Hb_000074_060 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_006663_090--Hb_001386_140 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_103760_010 Hb_103760_010 Hb_007026_040--Hb_103760_010 Hb_000236_310 Hb_000236_310 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_001386_140--Hb_010565_010 Hb_001386_140--Hb_005023_030 Hb_002067_120 Hb_002067_120 Hb_001386_140--Hb_002067_120 Hb_054586_020 Hb_054586_020 Hb_001386_140--Hb_054586_020 Hb_010565_010--Hb_002067_120 Hb_000606_080 Hb_000606_080 Hb_010565_010--Hb_000606_080 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.0268 40.3863 28.9545 142.451 74.101 342.105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
67.9565 43.272 82.5268 92.4076 57.0025

CAGE analysis