Hb_034280_010

Information

Type -
Description -
Location Contig34280: 15849-23198
Sequence    

Annotation

kegg
ID rcu:RCOM_1316760
description Protein bem46, putative
nr
ID XP_002518992.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q7ZVZ7
description Alpha/beta hydrolase domain-containing protein 17C OS=Danio rerio GN=abhd17c PE=2 SV=1
trembl
ID B9RZ23
description Protein bem46, putative OS=Ricinus communis GN=RCOM_1316760 PE=4 SV=1
Gene Ontology
ID GO:0005886
description alpha beta hydrolase domain-containing protein 17b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35804: 16026-16222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034280_010 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_003972_040 0.1447391734 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
3 Hb_032208_050 0.1489405592 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
4 Hb_003050_100 0.1689133013 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
5 Hb_000032_430 0.1748764365 - - conserved hypothetical protein [Ricinus communis]
6 Hb_028115_010 0.1879142393 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000110_380 0.1955968769 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
8 Hb_000080_080 0.2040784608 - - -
9 Hb_028001_020 0.2051462971 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
10 Hb_001178_090 0.207665751 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
11 Hb_159582_010 0.2116317635 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_002592_050 0.2127196485 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
13 Hb_001369_140 0.2150044914 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003647_040 0.2193151868 - - conserved hypothetical protein [Ricinus communis]
15 Hb_173741_010 0.2201076371 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
16 Hb_018691_010 0.2244903262 - - -
17 Hb_002217_490 0.2245844267 - - -
18 Hb_010872_040 0.226844231 - - hypothetical protein F775_31993 [Aegilops tauschii]
19 Hb_000000_110 0.2292281639 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
20 Hb_000011_380 0.2333553612 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]

Gene co-expression network

sample Hb_034280_010 Hb_034280_010 Hb_003972_040 Hb_003972_040 Hb_034280_010--Hb_003972_040 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_028115_010 Hb_028115_010 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_003972_040--Hb_028115_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_002592_050 Hb_002592_050 Hb_032208_050--Hb_002592_050 Hb_032208_050--Hb_003050_100 Hb_005694_180 Hb_005694_180 Hb_032208_050--Hb_005694_180 Hb_001178_090 Hb_001178_090 Hb_032208_050--Hb_001178_090 Hb_003647_040 Hb_003647_040 Hb_032208_050--Hb_003647_040 Hb_003050_100--Hb_002592_050 Hb_003050_100--Hb_001178_090 Hb_005839_030 Hb_005839_030 Hb_003050_100--Hb_005839_030 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090 Hb_000032_430--Hb_001178_090 Hb_160405_010 Hb_160405_010 Hb_000032_430--Hb_160405_010 Hb_000032_430--Hb_003647_040 Hb_002749_040 Hb_002749_040 Hb_000032_430--Hb_002749_040 Hb_002539_050 Hb_002539_050 Hb_000032_430--Hb_002539_050 Hb_028115_010--Hb_010872_040 Hb_005970_010 Hb_005970_010 Hb_028115_010--Hb_005970_010 Hb_000000_120 Hb_000000_120 Hb_028115_010--Hb_000000_120 Hb_001014_190 Hb_001014_190 Hb_028115_010--Hb_001014_190 Hb_000818_080 Hb_000818_080 Hb_028115_010--Hb_000818_080 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_001170_010 Hb_001170_010 Hb_000110_380--Hb_001170_010 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.448717 0.789267 0.699523 4.18175 0.155117 0.558338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123185 0.226097 0 2.48473 0.200424

CAGE analysis