Hb_000679_200

Information

Type -
Description -
Location Contig679: 140696-141028
Sequence    

Annotation

kegg
ID tcc:TCM_037001
description EIN3-binding F box protein 1
nr
ID XP_007011864.1
description EIN3-binding F box protein 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GJ82
description EIN3-binding F box protein 1 OS=Theobroma cacao GN=TCM_037001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53700: 140702-145087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_200 0.0 - - EIN3-binding F box protein 1 [Theobroma cacao]
2 Hb_060391_010 0.1765105398 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000098_300 0.1768399973 - - -
4 Hb_026337_010 0.1939962791 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
5 Hb_007333_040 0.2073417189 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
6 Hb_004724_120 0.2101140351 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
7 Hb_003972_040 0.210972578 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
8 Hb_165402_010 0.2125505006 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
9 Hb_000215_310 0.2145771907 - - -
10 Hb_001195_160 0.2148789566 - - -
11 Hb_001708_010 0.2199194434 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
12 Hb_077573_010 0.2214108583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_033385_010 0.227753815 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
14 Hb_141296_010 0.2296525657 - - -
15 Hb_106688_010 0.2304018746 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
16 Hb_001247_300 0.2322866901 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
17 Hb_000413_230 0.2341396666 - - thioredoxin h [Hevea brasiliensis]
18 Hb_018691_010 0.2359140744 - - -
19 Hb_133127_010 0.2391398957 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_002370_030 0.2414218342 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_200 Hb_000679_200 Hb_060391_010 Hb_060391_010 Hb_000679_200--Hb_060391_010 Hb_000098_300 Hb_000098_300 Hb_000679_200--Hb_000098_300 Hb_026337_010 Hb_026337_010 Hb_000679_200--Hb_026337_010 Hb_007333_040 Hb_007333_040 Hb_000679_200--Hb_007333_040 Hb_004724_120 Hb_004724_120 Hb_000679_200--Hb_004724_120 Hb_003972_040 Hb_003972_040 Hb_000679_200--Hb_003972_040 Hb_102591_010 Hb_102591_010 Hb_060391_010--Hb_102591_010 Hb_165402_010 Hb_165402_010 Hb_060391_010--Hb_165402_010 Hb_050034_010 Hb_050034_010 Hb_060391_010--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_022891_010 Hb_022891_010 Hb_000098_300--Hb_022891_010 Hb_000098_300--Hb_007333_040 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_141212_010 Hb_141212_010 Hb_026337_010--Hb_141212_010 Hb_063480_020 Hb_063480_020 Hb_026337_010--Hb_063480_020 Hb_000130_060 Hb_000130_060 Hb_026337_010--Hb_000130_060 Hb_002370_030 Hb_002370_030 Hb_026337_010--Hb_002370_030 Hb_001278_040 Hb_001278_040 Hb_026337_010--Hb_001278_040 Hb_007333_040--Hb_033385_010 Hb_106415_010 Hb_106415_010 Hb_007333_040--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_007333_040--Hb_009119_020 Hb_054586_020 Hb_054586_020 Hb_007333_040--Hb_054586_020 Hb_181328_010 Hb_181328_010 Hb_007333_040--Hb_181328_010 Hb_019053_010 Hb_019053_010 Hb_007333_040--Hb_019053_010 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_004724_120--Hb_000130_060 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_034280_010 Hb_034280_010 Hb_003972_040--Hb_034280_010 Hb_028115_010 Hb_028115_010 Hb_003972_040--Hb_028115_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.12613 23.8622 3.96069 57.5387 6.66893 50.1905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56251 2.52444 5.6416 39.973 4.81828

CAGE analysis