Hb_050034_010

Information

Type -
Description -
Location Contig50034: 396-795
Sequence    

Annotation

kegg
ID rcu:RCOM_1680770
description hypothetical protein
nr
ID XP_012066561.1
description PREDICTED: cullin-1 [Jatropha curcas]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067LEP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24333 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050034_010 0.0 - - PREDICTED: cullin-1 [Jatropha curcas]
2 Hb_007456_020 0.1266012833 - - unknown [Lotus japonicus]
3 Hb_102591_010 0.1407873324 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
4 Hb_099116_010 0.1591536103 - - conserved hypothetical protein [Ricinus communis]
5 Hb_165402_010 0.1673402611 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
6 Hb_000168_010 0.1691651352 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
7 Hb_060391_010 0.1719720029 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_181441_010 0.1724153455 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
9 Hb_004040_030 0.1774339001 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
10 Hb_000035_330 0.1800481055 - - Transmembrane protein 85 [Theobroma cacao]
11 Hb_010003_010 0.1819997377 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
12 Hb_005271_230 0.182940945 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
13 Hb_005170_010 0.1863264666 - - -
14 Hb_006274_040 0.186359742 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
15 Hb_002611_020 0.1870818859 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
16 Hb_143629_130 0.1901829347 - - unnamed protein product [Coffea canephora]
17 Hb_002611_030 0.193285098 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_100137_010 0.1939801414 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
19 Hb_028089_020 0.1974501254 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_086765_010 0.1975150519 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_050034_010 Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_060391_010 Hb_060391_010 Hb_050034_010--Hb_060391_010 Hb_007456_020--Hb_099116_010 Hb_007456_020--Hb_102591_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_003780_020 Hb_003780_020 Hb_007456_020--Hb_003780_020 Hb_007456_020--Hb_000168_010 Hb_102591_010--Hb_165402_010 Hb_181328_010 Hb_181328_010 Hb_102591_010--Hb_181328_010 Hb_002611_020 Hb_002611_020 Hb_102591_010--Hb_002611_020 Hb_000077_290 Hb_000077_290 Hb_102591_010--Hb_000077_290 Hb_099116_010--Hb_000168_010 Hb_004881_030 Hb_004881_030 Hb_099116_010--Hb_004881_030 Hb_099116_010--Hb_003780_020 Hb_000004_020 Hb_000004_020 Hb_099116_010--Hb_000004_020 Hb_000586_030 Hb_000586_030 Hb_099116_010--Hb_000586_030 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_077573_010 Hb_077573_010 Hb_165402_010--Hb_077573_010 Hb_165402_010--Hb_002611_020 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000168_010--Hb_000586_030 Hb_000168_010--Hb_002611_020 Hb_060391_010--Hb_102591_010 Hb_060391_010--Hb_165402_010 Hb_000679_200 Hb_000679_200 Hb_060391_010--Hb_000679_200 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44073 3.76991 2.73103 17.1831 2.83277 12.5091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.659038 3.11146 1.13541 7.14446 8.24131

CAGE analysis