Hb_169656_010

Information

Type -
Description -
Location Contig169656: 232-820
Sequence    

Annotation

kegg
ID rcu:RCOM_1591100
description protein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002510242.1
description protein phosphatase, putative [Ricinus communis]
swissprot
ID Q9FX08
description Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1
trembl
ID B9R7E9
description Protein phosphatase, putative OS=Ricinus communis GN=RCOM_1591100 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein phosphatase 2c 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15772: 748-1216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169656_010 0.0 - - protein phosphatase, putative [Ricinus communis]
2 Hb_000254_070 0.1359168503 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
3 Hb_132101_010 0.143069394 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
4 Hb_011214_110 0.1479675123 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
5 Hb_014497_060 0.1500177641 - - phosphofructokinase, putative [Ricinus communis]
6 Hb_001689_040 0.1503146844 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like [Jatropha curcas]
7 Hb_000244_260 0.1512703849 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
8 Hb_002284_100 0.1514204388 - - ribophorin, putative [Ricinus communis]
9 Hb_004116_170 0.1532864949 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
10 Hb_021297_020 0.1545587305 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
11 Hb_007456_020 0.1545829791 - - unknown [Lotus japonicus]
12 Hb_001148_080 0.1594307698 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
13 Hb_059741_010 0.1617048159 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
14 Hb_012678_010 0.1621848855 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
15 Hb_000701_030 0.1630583631 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
16 Hb_022092_010 0.1633942895 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
17 Hb_002631_130 0.165047967 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
18 Hb_001584_340 0.1659967816 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
19 Hb_024570_040 0.1661028195 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
20 Hb_169586_010 0.1681902692 - - Acid phosphatase/vanadium-dependent haloperoxidase-related protein [Theobroma cacao]

Gene co-expression network

sample Hb_169656_010 Hb_169656_010 Hb_000254_070 Hb_000254_070 Hb_169656_010--Hb_000254_070 Hb_132101_010 Hb_132101_010 Hb_169656_010--Hb_132101_010 Hb_011214_110 Hb_011214_110 Hb_169656_010--Hb_011214_110 Hb_014497_060 Hb_014497_060 Hb_169656_010--Hb_014497_060 Hb_001689_040 Hb_001689_040 Hb_169656_010--Hb_001689_040 Hb_000244_260 Hb_000244_260 Hb_169656_010--Hb_000244_260 Hb_000003_310 Hb_000003_310 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_000679_040 Hb_000679_040 Hb_000254_070--Hb_000679_040 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_183867_010 Hb_183867_010 Hb_132101_010--Hb_183867_010 Hb_013358_050 Hb_013358_050 Hb_132101_010--Hb_013358_050 Hb_022092_010 Hb_022092_010 Hb_132101_010--Hb_022092_010 Hb_000157_070 Hb_000157_070 Hb_132101_010--Hb_000157_070 Hb_004837_280 Hb_004837_280 Hb_132101_010--Hb_004837_280 Hb_002808_020 Hb_002808_020 Hb_132101_010--Hb_002808_020 Hb_002284_100 Hb_002284_100 Hb_011214_110--Hb_002284_100 Hb_004223_140 Hb_004223_140 Hb_011214_110--Hb_004223_140 Hb_001677_100 Hb_001677_100 Hb_011214_110--Hb_001677_100 Hb_003929_180 Hb_003929_180 Hb_011214_110--Hb_003929_180 Hb_019654_060 Hb_019654_060 Hb_011214_110--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_011214_110--Hb_004032_210 Hb_000256_110 Hb_000256_110 Hb_014497_060--Hb_000256_110 Hb_002026_070 Hb_002026_070 Hb_014497_060--Hb_002026_070 Hb_002902_140 Hb_002902_140 Hb_014497_060--Hb_002902_140 Hb_002232_490 Hb_002232_490 Hb_014497_060--Hb_002232_490 Hb_002631_130 Hb_002631_130 Hb_014497_060--Hb_002631_130 Hb_000922_260 Hb_000922_260 Hb_014497_060--Hb_000922_260 Hb_011377_040 Hb_011377_040 Hb_001689_040--Hb_011377_040 Hb_001689_040--Hb_022092_010 Hb_001689_040--Hb_002284_100 Hb_015884_020 Hb_015884_020 Hb_001689_040--Hb_015884_020 Hb_010172_010 Hb_010172_010 Hb_001689_040--Hb_010172_010 Hb_000979_130 Hb_000979_130 Hb_001689_040--Hb_000979_130 Hb_002072_010 Hb_002072_010 Hb_000244_260--Hb_002072_010 Hb_000244_260--Hb_000254_070 Hb_011310_050 Hb_011310_050 Hb_000244_260--Hb_011310_050 Hb_030565_110 Hb_030565_110 Hb_000244_260--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_000244_260--Hb_003058_200 Hb_000244_260--Hb_002026_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.45582 5.6546 20.8885 43.1176 8.11618 22.9661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.4236 4.67048 8.97547 35.803 33.1533

CAGE analysis