Hb_004040_030

Information

Type -
Description -
Location Contig4040: 79204-80633
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07380g
description hypothetical protein
nr
ID XP_012084986.1
description PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
swissprot
ID Q9LU72
description Probable inactive purple acid phosphatase 28 OS=Arabidopsis thaliana GN=PAP28 PE=2 SV=1
trembl
ID A0A067JVZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22185 PE=4 SV=1
Gene Ontology
ID GO:0003993
description probable inactive purple acid phosphatase 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40095: 78276-79101 , PASA_asmbl_40096: 65646-82420 , PASA_asmbl_40097: 79272-80868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004040_030 0.0 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]
2 Hb_007286_020 0.0935171832 - - hypothetical protein L484_010675 [Morus notabilis]
3 Hb_003052_180 0.1066333467 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
4 Hb_000035_330 0.1071731652 - - Transmembrane protein 85 [Theobroma cacao]
5 Hb_143629_130 0.1221405728 - - unnamed protein product [Coffea canephora]
6 Hb_002781_030 0.1235908531 - - protein binding protein, putative [Ricinus communis]
7 Hb_000258_240 0.1236371075 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
8 Hb_000168_010 0.1279791229 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
9 Hb_000787_160 0.1304006613 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
10 Hb_138475_010 0.1304271307 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
11 Hb_003097_140 0.1308875306 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_002611_020 0.1319105975 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
13 Hb_000917_130 0.1319709384 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
14 Hb_002226_080 0.1323088181 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
15 Hb_000107_080 0.133139967 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
16 Hb_003998_040 0.1333398582 - - organic anion transporter, putative [Ricinus communis]
17 Hb_000836_280 0.1339892267 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
18 Hb_010042_030 0.134333464 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
19 Hb_004102_170 0.1343747954 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
20 Hb_005218_020 0.1347369642 - - Uncharacterized protein isoform 3 [Theobroma cacao]

Gene co-expression network

sample Hb_004040_030 Hb_004040_030 Hb_007286_020 Hb_007286_020 Hb_004040_030--Hb_007286_020 Hb_003052_180 Hb_003052_180 Hb_004040_030--Hb_003052_180 Hb_000035_330 Hb_000035_330 Hb_004040_030--Hb_000035_330 Hb_143629_130 Hb_143629_130 Hb_004040_030--Hb_143629_130 Hb_002781_030 Hb_002781_030 Hb_004040_030--Hb_002781_030 Hb_000258_240 Hb_000258_240 Hb_004040_030--Hb_000258_240 Hb_001051_070 Hb_001051_070 Hb_007286_020--Hb_001051_070 Hb_004102_170 Hb_004102_170 Hb_007286_020--Hb_004102_170 Hb_086639_080 Hb_086639_080 Hb_007286_020--Hb_086639_080 Hb_010042_030 Hb_010042_030 Hb_007286_020--Hb_010042_030 Hb_000679_100 Hb_000679_100 Hb_007286_020--Hb_000679_100 Hb_002486_050 Hb_002486_050 Hb_007286_020--Hb_002486_050 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_000701_030 Hb_000701_030 Hb_000035_330--Hb_000701_030 Hb_003097_140 Hb_003097_140 Hb_000035_330--Hb_003097_140 Hb_002902_130 Hb_002902_130 Hb_000035_330--Hb_002902_130 Hb_000035_330--Hb_143629_130 Hb_000035_330--Hb_007286_020 Hb_001006_270 Hb_001006_270 Hb_000035_330--Hb_001006_270 Hb_002414_060 Hb_002414_060 Hb_143629_130--Hb_002414_060 Hb_007558_100 Hb_007558_100 Hb_143629_130--Hb_007558_100 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_004317_060 Hb_004317_060 Hb_143629_130--Hb_004317_060 Hb_002781_030--Hb_000258_240 Hb_000928_190 Hb_000928_190 Hb_002781_030--Hb_000928_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66468 6.06892 5.66381 24.5351 3.54024 12.3051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.46206 4.95433 5.46962 11.0646 7.79869

CAGE analysis