Hb_060391_010

Information

Type -
Description -
Location Contig60391: 197-667
Sequence    

Annotation

kegg
ID rcu:RCOM_0855350
description nucleic acid binding protein, putative
nr
ID XP_002517495.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUQ0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0855350 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding region rnp-1 (rna recognition motif) isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50680: 650-960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_060391_010 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_102591_010 0.1511146829 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
3 Hb_165402_010 0.1606103183 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
4 Hb_050034_010 0.1719720029 - - PREDICTED: cullin-1 [Jatropha curcas]
5 Hb_000679_200 0.1765105398 - - EIN3-binding F box protein 1 [Theobroma cacao]
6 Hb_007456_020 0.1789233476 - - unknown [Lotus japonicus]
7 Hb_000366_020 0.1800594913 - - -
8 Hb_000168_010 0.1855666184 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
9 Hb_002611_030 0.1885479245 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
10 Hb_181328_010 0.1896124217 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005271_230 0.1907040128 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
12 Hb_033385_010 0.1914007165 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
13 Hb_007333_040 0.1914599341 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
14 Hb_181441_010 0.1921331926 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
15 Hb_000098_300 0.1968114368 - - -
16 Hb_000215_310 0.1968372789 - - -
17 Hb_013358_090 0.2032080392 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
18 Hb_002611_020 0.2046745124 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
19 Hb_077573_010 0.2076574456 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_148131_010 0.2090142832 - - PREDICTED: ribosome biogenesis protein WDR12-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_060391_010 Hb_060391_010 Hb_102591_010 Hb_102591_010 Hb_060391_010--Hb_102591_010 Hb_165402_010 Hb_165402_010 Hb_060391_010--Hb_165402_010 Hb_050034_010 Hb_050034_010 Hb_060391_010--Hb_050034_010 Hb_000679_200 Hb_000679_200 Hb_060391_010--Hb_000679_200 Hb_007456_020 Hb_007456_020 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020 Hb_102591_010--Hb_165402_010 Hb_181328_010 Hb_181328_010 Hb_102591_010--Hb_181328_010 Hb_102591_010--Hb_050034_010 Hb_002611_020 Hb_002611_020 Hb_102591_010--Hb_002611_020 Hb_000077_290 Hb_000077_290 Hb_102591_010--Hb_000077_290 Hb_102591_010--Hb_007456_020 Hb_181441_010 Hb_181441_010 Hb_165402_010--Hb_181441_010 Hb_106688_010 Hb_106688_010 Hb_165402_010--Hb_106688_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_077573_010 Hb_077573_010 Hb_165402_010--Hb_077573_010 Hb_165402_010--Hb_002611_020 Hb_050034_010--Hb_007456_020 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_000098_300 Hb_000098_300 Hb_000679_200--Hb_000098_300 Hb_026337_010 Hb_026337_010 Hb_000679_200--Hb_026337_010 Hb_007333_040 Hb_007333_040 Hb_000679_200--Hb_007333_040 Hb_004724_120 Hb_004724_120 Hb_000679_200--Hb_004724_120 Hb_003972_040 Hb_003972_040 Hb_000679_200--Hb_003972_040 Hb_007456_020--Hb_099116_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_003780_020 Hb_003780_020 Hb_007456_020--Hb_003780_020 Hb_007456_020--Hb_000168_010 Hb_000366_020--Hb_050034_010 Hb_000366_020--Hb_007456_020 Hb_005271_230 Hb_005271_230 Hb_000366_020--Hb_005271_230 Hb_000366_020--Hb_181441_010 Hb_000566_180 Hb_000566_180 Hb_000366_020--Hb_000566_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9833 19.5644 21.0189 115.855 12.0841 94.9008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.69771 3.03601 4.66373 63.8166 25.7453

CAGE analysis