Hb_022891_010

Information

Type -
Description -
Location Contig22891: 1295-1931
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18870g
description POPTRDRAFT_831333; chitinase family protein
nr
ID AHF88836.1
description chitinase-like protein [Hevea brasiliensis]
swissprot
ID P19171
description Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3
trembl
ID W0IVX0
description Chitinase-like protein OS=Hevea brasiliensis GN=chi-L1 PE=4 SV=1
Gene Ontology
ID GO:0005774
description basic endochitinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022891_010 0.0 - - chitinase-like protein [Hevea brasiliensis]
2 Hb_130367_010 0.1315901948 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
3 Hb_002815_050 0.1461287552 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
4 Hb_000034_090 0.1770609677 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
5 Hb_007188_030 0.1780132873 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
6 Hb_000098_300 0.1816910434 - - -
7 Hb_003030_040 0.1873334365 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
8 Hb_032258_020 0.1900516605 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
9 Hb_006910_050 0.197550632 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
10 Hb_005107_020 0.1986663328 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
11 Hb_001089_080 0.2010801807 - - hypothetical protein glysoja_044047 [Glycine soja]
12 Hb_003656_150 0.2129481053 - - -
13 Hb_005679_070 0.2193409395 - - hypothetical protein M569_07741, partial [Genlisea aurea]
14 Hb_012675_080 0.2207828241 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
15 Hb_000215_310 0.2244041511 - - -
16 Hb_029142_020 0.2259148791 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
17 Hb_007527_070 0.2273086988 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
18 Hb_009083_030 0.2277046492 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
19 Hb_183522_010 0.2300761608 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_000168_010 0.2314013471 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_022891_010 Hb_022891_010 Hb_130367_010 Hb_130367_010 Hb_022891_010--Hb_130367_010 Hb_002815_050 Hb_002815_050 Hb_022891_010--Hb_002815_050 Hb_000034_090 Hb_000034_090 Hb_022891_010--Hb_000034_090 Hb_007188_030 Hb_007188_030 Hb_022891_010--Hb_007188_030 Hb_000098_300 Hb_000098_300 Hb_022891_010--Hb_000098_300 Hb_003030_040 Hb_003030_040 Hb_022891_010--Hb_003030_040 Hb_006910_050 Hb_006910_050 Hb_130367_010--Hb_006910_050 Hb_130367_010--Hb_002815_050 Hb_130367_010--Hb_007188_030 Hb_130367_010--Hb_003030_040 Hb_001089_080 Hb_001089_080 Hb_130367_010--Hb_001089_080 Hb_005679_070 Hb_005679_070 Hb_002815_050--Hb_005679_070 Hb_002815_050--Hb_003030_040 Hb_002815_050--Hb_007188_030 Hb_003656_150 Hb_003656_150 Hb_002815_050--Hb_003656_150 Hb_068014_010 Hb_068014_010 Hb_002815_050--Hb_068014_010 Hb_005107_020 Hb_005107_020 Hb_000034_090--Hb_005107_020 Hb_006162_020 Hb_006162_020 Hb_000034_090--Hb_006162_020 Hb_099298_010 Hb_099298_010 Hb_000034_090--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_000034_090--Hb_002079_040 Hb_041601_010 Hb_041601_010 Hb_000034_090--Hb_041601_010 Hb_012675_080 Hb_012675_080 Hb_000034_090--Hb_012675_080 Hb_007188_030--Hb_003656_150 Hb_006198_090 Hb_006198_090 Hb_007188_030--Hb_006198_090 Hb_177103_010 Hb_177103_010 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070 Hb_141296_010 Hb_141296_010 Hb_000098_300--Hb_141296_010 Hb_000679_200 Hb_000679_200 Hb_000098_300--Hb_000679_200 Hb_007333_040 Hb_007333_040 Hb_000098_300--Hb_007333_040 Hb_060391_010 Hb_060391_010 Hb_000098_300--Hb_060391_010 Hb_033385_010 Hb_033385_010 Hb_000098_300--Hb_033385_010 Hb_031866_050 Hb_031866_050 Hb_003030_040--Hb_031866_050 Hb_003030_040--Hb_003656_150 Hb_003030_040--Hb_005107_020 Hb_003030_040--Hb_005679_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01855 0.746309 0.480709 41.3349 0.876968 41.0411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74313 5.57536 4.10509 15.732 4.44644

CAGE analysis