Hb_006910_050

Information

Type -
Description -
Location Contig6910: 65257-65969
Sequence    

Annotation

kegg
ID mtr:MTR_8g105710
description hypothetical protein
nr
ID KDO40931.1
description hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DQQ3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0480481mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54345: 65224-87980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006910_050 0.0 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
2 Hb_130367_010 0.1431019289 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
3 Hb_007527_070 0.1680815229 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
4 Hb_022891_010 0.197550632 - - chitinase-like protein [Hevea brasiliensis]
5 Hb_005271_230 0.1976769451 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
6 Hb_047691_010 0.2170320464 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
7 Hb_002611_030 0.2292277238 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_003642_020 0.2431649752 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
9 Hb_041601_010 0.2441918511 - - -
10 Hb_002815_050 0.2457627759 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
11 Hb_000566_180 0.2481995892 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
12 Hb_000168_010 0.2489485497 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
13 Hb_121694_010 0.2495198817 - - structural constituent of ribosome, putative [Ricinus communis]
14 Hb_001089_080 0.2507661174 - - hypothetical protein glysoja_044047 [Glycine soja]
15 Hb_060391_010 0.2519137422 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_009083_030 0.2526460496 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
17 Hb_000098_300 0.2538649789 - - -
18 Hb_008206_090 0.2538946696 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
19 Hb_003030_040 0.254651615 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
20 Hb_048702_010 0.2555585901 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006910_050 Hb_006910_050 Hb_130367_010 Hb_130367_010 Hb_006910_050--Hb_130367_010 Hb_007527_070 Hb_007527_070 Hb_006910_050--Hb_007527_070 Hb_022891_010 Hb_022891_010 Hb_006910_050--Hb_022891_010 Hb_005271_230 Hb_005271_230 Hb_006910_050--Hb_005271_230 Hb_047691_010 Hb_047691_010 Hb_006910_050--Hb_047691_010 Hb_002611_030 Hb_002611_030 Hb_006910_050--Hb_002611_030 Hb_130367_010--Hb_022891_010 Hb_002815_050 Hb_002815_050 Hb_130367_010--Hb_002815_050 Hb_007188_030 Hb_007188_030 Hb_130367_010--Hb_007188_030 Hb_003030_040 Hb_003030_040 Hb_130367_010--Hb_003030_040 Hb_001089_080 Hb_001089_080 Hb_130367_010--Hb_001089_080 Hb_007527_070--Hb_002611_030 Hb_000168_010 Hb_000168_010 Hb_007527_070--Hb_000168_010 Hb_007527_070--Hb_130367_010 Hb_007527_070--Hb_047691_010 Hb_121694_010 Hb_121694_010 Hb_007527_070--Hb_121694_010 Hb_022891_010--Hb_002815_050 Hb_000034_090 Hb_000034_090 Hb_022891_010--Hb_000034_090 Hb_022891_010--Hb_007188_030 Hb_000098_300 Hb_000098_300 Hb_022891_010--Hb_000098_300 Hb_022891_010--Hb_003030_040 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_000566_180 Hb_000566_180 Hb_005271_230--Hb_000566_180 Hb_050034_010 Hb_050034_010 Hb_005271_230--Hb_050034_010 Hb_060391_010 Hb_060391_010 Hb_005271_230--Hb_060391_010 Hb_005271_230--Hb_002611_030 Hb_001059_140 Hb_001059_140 Hb_047691_010--Hb_001059_140 Hb_047691_010--Hb_121694_010 Hb_041601_010 Hb_041601_010 Hb_047691_010--Hb_041601_010 Hb_017014_020 Hb_017014_020 Hb_047691_010--Hb_017014_020 Hb_009083_030 Hb_009083_030 Hb_047691_010--Hb_009083_030 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_100137_010 Hb_100137_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_002611_030--Hb_048702_010 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.9681 2.76338 64.0717 0 43.0481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71089 1.67766 8.85509 19.6202 15.4859

CAGE analysis