Hb_006422_030

Information

Type -
Description -
Location Contig6422: 17737-17964
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52214: 17347-18252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006422_030 0.0 - - -
2 Hb_005271_230 0.1516336984 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
3 Hb_060458_010 0.1935818573 - - conserved hypothetical protein [Ricinus communis]
4 Hb_060391_010 0.2106913656 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_094437_040 0.211061002 - - ankyrin repeat family protein, partial [Manihot esculenta]
6 Hb_050034_010 0.2158268865 - - PREDICTED: cullin-1 [Jatropha curcas]
7 Hb_001059_140 0.2270713532 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
8 Hb_002611_030 0.2311452657 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
9 Hb_001050_060 0.2323577162 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
10 Hb_141296_010 0.2361228805 - - -
11 Hb_007456_020 0.2397035463 - - unknown [Lotus japonicus]
12 Hb_000098_300 0.2416494883 - - -
13 Hb_012490_110 0.242062698 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
14 Hb_086765_010 0.2424925963 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
15 Hb_003030_040 0.2456065848 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
16 Hb_102591_010 0.2506916581 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
17 Hb_033385_010 0.2508395075 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
18 Hb_000366_020 0.2508812214 - - -
19 Hb_007333_040 0.2513235021 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
20 Hb_003642_020 0.2537820182 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_006422_030 Hb_006422_030 Hb_005271_230 Hb_005271_230 Hb_006422_030--Hb_005271_230 Hb_060458_010 Hb_060458_010 Hb_006422_030--Hb_060458_010 Hb_060391_010 Hb_060391_010 Hb_006422_030--Hb_060391_010 Hb_094437_040 Hb_094437_040 Hb_006422_030--Hb_094437_040 Hb_050034_010 Hb_050034_010 Hb_006422_030--Hb_050034_010 Hb_001059_140 Hb_001059_140 Hb_006422_030--Hb_001059_140 Hb_000566_180 Hb_000566_180 Hb_005271_230--Hb_000566_180 Hb_005271_230--Hb_050034_010 Hb_005271_230--Hb_060391_010 Hb_006910_050 Hb_006910_050 Hb_005271_230--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_005271_230--Hb_002611_030 Hb_141296_010 Hb_141296_010 Hb_060458_010--Hb_141296_010 Hb_002126_020 Hb_002126_020 Hb_060458_010--Hb_002126_020 Hb_000082_020 Hb_000082_020 Hb_060458_010--Hb_000082_020 Hb_005318_020 Hb_005318_020 Hb_060458_010--Hb_005318_020 Hb_114079_010 Hb_114079_010 Hb_060458_010--Hb_114079_010 Hb_102591_010 Hb_102591_010 Hb_060391_010--Hb_102591_010 Hb_165402_010 Hb_165402_010 Hb_060391_010--Hb_165402_010 Hb_060391_010--Hb_050034_010 Hb_000679_200 Hb_000679_200 Hb_060391_010--Hb_000679_200 Hb_007456_020 Hb_007456_020 Hb_060391_010--Hb_007456_020 Hb_000366_020 Hb_000366_020 Hb_060391_010--Hb_000366_020 Hb_094437_040--Hb_002611_030 Hb_041025_010 Hb_041025_010 Hb_094437_040--Hb_041025_010 Hb_183522_010 Hb_183522_010 Hb_094437_040--Hb_183522_010 Hb_094437_040--Hb_114079_010 Hb_003642_020 Hb_003642_020 Hb_094437_040--Hb_003642_020 Hb_050034_010--Hb_007456_020 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_048702_010 Hb_048702_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.50688 9.57039 3.56598 60.0645 3.69496 61.379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.36819 1.62779 13.1956 23.2492

CAGE analysis