Hb_001059_140

Information

Type -
Description -
Location Contig1059: 130933-131293
Sequence    

Annotation

kegg
ID pop:POPTR_0004s03390g
description POPTRDRAFT_859146; hypothetical protein
nr
ID XP_002304998.1
description hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
swissprot
ID O02414
description Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1
trembl
ID B9H215
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03390g PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001059_140 0.0 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
2 Hb_047691_010 0.1691903622 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
3 Hb_048702_010 0.1837252501 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
4 Hb_017014_020 0.1875986478 - - -
5 Hb_121694_010 0.1895551514 - - structural constituent of ribosome, putative [Ricinus communis]
6 Hb_099990_020 0.1941672552 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
7 Hb_184541_010 0.1999170136 - - PREDICTED: selT-like protein [Jatropha curcas]
8 Hb_100137_010 0.2009082997 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
9 Hb_188313_010 0.2014469772 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
10 Hb_009083_030 0.2015379601 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
11 Hb_002611_030 0.2069716623 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
12 Hb_003642_020 0.2103398588 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
13 Hb_004525_050 0.2127624298 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
14 Hb_006634_110 0.2175694694 - - BnaC04g40780D [Brassica napus]
15 Hb_006422_030 0.2270713532 - - -
16 Hb_005271_230 0.2276027728 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
17 Hb_003740_040 0.2297017364 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
18 Hb_004525_080 0.2323103198 - - Sugar transporter ERD6-like 6 [Morus notabilis]
19 Hb_002760_050 0.2331624887 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010984_040 0.2348573595 - - hypothetical protein M569_17286, partial [Genlisea aurea]

Gene co-expression network

sample Hb_001059_140 Hb_001059_140 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_048702_010 Hb_048702_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010 Hb_047691_010--Hb_121694_010 Hb_041601_010 Hb_041601_010 Hb_047691_010--Hb_041601_010 Hb_047691_010--Hb_017014_020 Hb_009083_030 Hb_009083_030 Hb_047691_010--Hb_009083_030 Hb_007527_070 Hb_007527_070 Hb_047691_010--Hb_007527_070 Hb_006634_110 Hb_006634_110 Hb_048702_010--Hb_006634_110 Hb_100137_010 Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_122636_010 Hb_122636_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_022614_010 Hb_022614_010 Hb_017014_020--Hb_022614_010 Hb_162090_010 Hb_162090_010 Hb_017014_020--Hb_162090_010 Hb_006162_020 Hb_006162_020 Hb_017014_020--Hb_006162_020 Hb_017014_020--Hb_009083_030 Hb_188313_010 Hb_188313_010 Hb_017014_020--Hb_188313_010 Hb_000025_080 Hb_000025_080 Hb_017014_020--Hb_000025_080 Hb_121694_010--Hb_009083_030 Hb_121694_010--Hb_184541_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_004125_070 Hb_004125_070 Hb_121694_010--Hb_004125_070 Hb_001486_050 Hb_001486_050 Hb_099990_020--Hb_001486_050 Hb_004525_080 Hb_004525_080 Hb_099990_020--Hb_004525_080 Hb_080081_010 Hb_080081_010 Hb_099990_020--Hb_080081_010 Hb_006816_110 Hb_006816_110 Hb_099990_020--Hb_006816_110 Hb_001379_070 Hb_001379_070 Hb_099990_020--Hb_001379_070 Hb_184541_010--Hb_004125_070 Hb_184541_010--Hb_188313_010 Hb_011918_010 Hb_011918_010 Hb_184541_010--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_009083_030 Hb_184541_010--Hb_100137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06533 1.32117 0.856494 21.8865 0.933434 6.79011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.30237 0.568608 2.43865 3.66793

CAGE analysis